HsaEX6094152 @ hg38
Exon Skipping
Gene
ENSG00000089639 | GMIP
Description
GEM interacting protein [Source:HGNC Symbol;Acc:HGNC:24852]
Coordinates
chr19:19638159-19640192:-
Coord C1 exon
chr19:19640085-19640192
Coord A exon
chr19:19638402-19638482
Coord C2 exon
chr19:19638159-19638329
Length
81 bp
Sequences
Splice sites
3' ss Seq
CCATCCCCAACCCTTGCCAGCCC
3' ss Score
3.34
5' ss Seq
ATGGTGAGG
5' ss Score
7.61
Exon sequences
Seq C1 exon
AGCCACATGCCTCTGCAGTACATCTACACCCTGTTTCTGGAGCACGATCTCAGCCTGGGAACCCTGGCCATGGAGACAGTGGCCCAGCAGAAAAGAGACTACTACCAG
Seq A exon
CCCCTCGCCGCCAAACGGACTGAGATTGAGAAGTGGCGGAAGGAGTTCAAGGAGCAGTGGATGAAGGAGCAGAAGCGGATG
Seq C2 exon
AATGAGGCGGTGCAGGCACTGCGGCGCGCCCAGCTGCAGTATGTGCAACGCAGCGAGGACCTGCGGGCACGCTCCCAGGGGTCCCCTGAGGACTCGGCCCCCCAGGCCTCGCCGGGACCTAGCAAGCAGCAGGAGCGGCGGCGGCGCTCGCGAGAGGAGGCCCAGGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000089639-'12-13,'12-12,15-13
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.692
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGTGGCCCAGCAGAAAAGAG
R:
CTCCTGCTGCTTGCTAGGTC
Band lengths:
167-248
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains