MmuEX6036001 @ mm10
Exon Skipping
Gene
ENSMUSG00000036246 | Gmip
Description
Gem-interacting protein [Source:MGI Symbol;Acc:MGI:1926066]
Coordinates
chr8:69811533-69813952:+
Coord C1 exon
chr8:69811533-69811640
Coord A exon
chr8:69813616-69813696
Coord C2 exon
chr8:69813782-69813952
Length
81 bp
Sequences
Splice sites
3' ss Seq
GACAATCCTCCACTCCACAGCCT
3' ss Score
6.7
5' ss Seq
ATGGTAAGG
5' ss Score
9.33
Exon sequences
Seq C1 exon
AGCCAAATGCCACTCCAGTACATCTACACCTTGTTTCTGGAGCATGACCTCAGCCTGGGAGCCCTGGCCCTGGAGACAGTGGCCCAACAGAAGAGAGACTACTACCAG
Seq A exon
CCTCTGGCGGCCAAAAGGATGGAAATTGAGAAGTGGAGGAAGGAATTCAAGGAACAGTGGCTGAAGGAGCAGAAGCGCATG
Seq C2 exon
AATGAGGCAGTGCAGGCACTGCGGCGCTCCGAGCTCCAGTACATTCAACGCAGAGAGGACCTGAGGGCACGCTCCCAGGGGTCCCCTGAGGACCCTCCTTCCCAGGCATCTCCTGGATCCAACAAGCAACAGGAGCGCAGACGGCGCTCCCGAGAGGAGGCACAGGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036246-'6-23,'6-22,17-23=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.684
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCAAATGCCACTCCAGTACA
R:
TCAGGTCCTCTCTGCGTTGAA
Band lengths:
171-252
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types