BtaEX6037040 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000011136 | NR2F6
Description
nuclear receptor subfamily 2, group F, member 6 [Source:HGNC Symbol;Acc:HGNC:7977]
Coordinates
chr7:5785643-5792042:+
Coord C1 exon
chr7:5785643-5785737
Coord A exon
chr7:5789357-5789941
Coord C2 exon
chr7:5791449-5792042
Length
585 bp
Sequences
Splice sites
3' ss Seq
TCTCTATCTCCCCTTCACAGCGG
3' ss Score
10.34
5' ss Seq
CTGGTGAGA
5' ss Score
7.54
Exon sequences
Seq C1 exon
GTCTAACCGTGACTGCCAGATCGACCAGCATCACCGGAACCAGTGCCAATACTGCCGCCTCAAGAAGTGCTTCCGGGTGGGCATGAGGAAGGAAG
Seq A exon
CGGTGCAGCGCGGCCGAATTCCGCACTCGCTACCGGGCACTGTGGCAGCCTCCTCGGGCAGCCCTCCTGGCTCTGCGCTGGCCGTGGCCGGCGGAGACCTCTTCCCGGGGCAGCCGGTGTCGGAGCTGATCGCGCAGCTGCTGCGTGCCGAGCCCTATCCCGCGGCGGCCGGGCGCTTCGGTGCAGGAGCCGCGGGCGCTTTCGGAGCCGGGAGCGGCGCGGCGGGCGCGGTGCTGGGCATCGACAATGTGTGTGAGCTGGCGGCGCGGCTGCTCTTCAGCACCGTGGAGTGGGCGCGCCACGCGCCCTTCTTCCCCGAGCTGCCGGTGGCCGACCAGGTGGCGCTGCTGCGCCTCAGCTGGAGCGAGCTCTTCGTGCTGAACGCGGCGCAGGCAGCGCTGCCCCTGCACACGGCGCCGCTGCTGGCCGCCGCCGGCCTGCATGCCGCGCCCATGGCCGCCGAGCGTGCCGTGGCCTTCATGGACCAGGTGCGCGCCTTCCAGGAACAGGTGGACAAACTGGGCCGTTTGCAGGTTGACTCCGCGGAGTATGGCTGCCTCAAGGCCATCGCGCTCTTCACACCTG
Seq C2 exon
ATGCCTGCGGCCTCTCAGACCCAGCGCATGTGGAGAGCCTGCAGGAGAAGGCGCAGGTGGCCCTCACCGAGTATGTGCGGGCCCAGTACCCATCGCAGCCCCAGCGCTTTGGGCGCCTGCTGCTGCGGCTCCCTGCCTTGCGTGCCGTCCCGGCCTCCCTCATCTCCCAGCTGTTCTTCATGCGCCTGGTGGGCAAGACGCCCATCGAGACGCTGATCCGAGACATGCTGCTGTCAGGAAGTACCTTCAACTGGCCCTACGGCTCAGGCCAGTGACCAGACAGGGCCAGGTCTGCAGACCTCAAGGGACACGGATGCTCAGGCCTCCGGGGCGGGGGAGGGTGCTCCCCCGGACAGAGGACCCTGGCTTCCCTCCTCAGACTCCTATTTTTTAAAGACTGTGAAATGTTTGTCTTTTCTGTTTTCTAAATGATCATGAAACCAAAAAGAGACTGATTTGTCTAGACTCCAGTCAAGTCTTCCCCAGAAACCCTGATGAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011136-'5-4,'5-1,6-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.046 C2=0.000
Domain overlap (PFAM):
C1:
PF0010513=zf-C4=PD(42.9=90.9)
A:
PF0010425=Hormone_recep=PU(65.0=60.7)
C2:
PF0010425=Hormone_recep=PD(34.4=68.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCAAGAAGTGCTTCCGGGTG
R:
ATCCGTGTCCCTTGAGGTCTG
Band lengths:
352-937
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]