DreEX0051446 @ danRer10
Exon Skipping
Gene
ENSDARG00000003165 | nr2f6b
Description
nuclear receptor subfamily 2, group F, member 6b [Source:ZFIN;Acc:ZDB-GENE-040426-2351]
Coordinates
chr11:6126745-6136325:+
Coord C1 exon
chr11:6126745-6126839
Coord A exon
chr11:6126989-6127564
Coord C2 exon
chr11:6135163-6136325
Length
576 bp
Sequences
Splice sites
3' ss Seq
CCGCCCTCTTTTTTTTCCAGCTG
3' ss Score
10.41
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
ATCAAACAGAGAATGTCAGATTGATCAGCATCACCGTAACCAGTGTCAGTACTGCCGTCTGAAGAAGTGCTTCCGGGTCGGTATGAGGAAAGAAG
Seq A exon
CTGTTCAGCGTGGCCGAATTCCTCCATCCCACGCAGGCATCAGCCCAGCCTCCATGGTAGGAGCAGGTGGTGATGTTGGAGGAGGTCCGGGCATGGGTGCTGATTTTTTTAATGGTCAGCCAGTGTCTGAACTCATCTCTCAACTACTGAGAGCAGAGCCGTACCCCAACAGCCGTTATGGAGCCCAGTGTGGCCAGCAGCTCCAAGGCGCCAACAGCTCCATGATGGGCATTGACAATATATGTGAGCTTGCAGCCCGGCTGCTGTTCAGCACTATTGAGTGGGCCAGGAATATTCCCTATTTTCCTGACCTGCCAGTGTCAGAGCAGGTGGCCCTTCTGAGGCTCAGCTGGAGTGAACTGTTTATCCTGAATGCAGCTCAGTCGGCGCTGCCCCTGCACACGGCCCCTCTGCTGGCAGCTGCAGGGTTTCACTCCTCCCCTATGCCCGCTGATCGCGTCGTGTCCTTCATGGACCAGGTGCGGGTCTTTCAGGACCAGGTGGACAAGCTGACACGACTGCAGGTGGATTCTGTTGAATACAGCTGTCTGAAAGCCATCGCTCTGTTCTCACCAG
Seq C2 exon
ATGCATGCGGGCTGTCGGATCCAGCGCACGTCGAGAGCTTGCAGGAGAAAGCACAGGTGGCCCTGACCGAATACGAGCGGATGCAGTATCCAGGCCAGCCCCAGCGGTTCGGCCGGCTCCTGCTGCGACTTCCCGCTCTGAGAGCCGTTCCCGCCAACCTCATCTCTCAACTCTTCTTCATGCGGCTGGTTGGCAAGACGCCAATCGAAACTCTAATCCGGGACATGCAGCTCTCTGGAAGCTCCATCAGCTGGCCGTATGTGCCTGGACAGTAGACGAACAATCAGAGGACTTGTTCCTATGTCCCATCTCAGGCTGCTCCCATGATTCCACAGTAACTGTGCAGATAGATGTCGTGTGTGGGTTTTGTCGATGGTGTATATATATATATATGACTAAAGGTGGATGACGCATATGTTCCTATGCAGTTTAATTGAGCCATCCAGTACCAGGATACCTCATGTTTTCTGTCATGAGCATCAACAAATTCTCTCAAAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000003165_MULTIEX1-4/4=3-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.010 A=0.061 C2=0.000
Domain overlap (PFAM):
C1:
PF0010513=zf-C4=PD(42.9=90.9)
A:
PF0010425=Hormone_recep=PU(66.3=65.3)
C2:
PF0010425=Hormone_recep=PD(33.2=68.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGGGTCGGTATGAGGAAAGA
R:
ATCATGGGAGCAGCCTGAGAT
Band lengths:
351-927
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]