RnoEX0060862 @ rn6
Exon Skipping
Gene
ENSRNOG00000016892 | Nr2f6
Description
nuclear receptor subfamily 2, group F, member 6 [Source:RGD Symbol;Acc:621685]
Coordinates
chr16:19769968-19774424:-
Coord C1 exon
chr16:19774330-19774424
Coord A exon
chr16:19771694-19772218
Coord C2 exon
chr16:19769968-19770606
Length
525 bp
Sequences
Splice sites
3' ss Seq
GCGCCCGTTTCCTTCTGCAGCGG
3' ss Score
9.52
5' ss Seq
CTGGTGAGC
5' ss Score
8.05
Exon sequences
Seq C1 exon
GTCCAACCGTGACTGTCAGATTGATCAGCATCACCGGAACCAGTGTCAGTACTGTCGCCTCAAGAAGTGCTTCCGGGTGGGCATGCGCAAGGAGG
Seq A exon
CGGTGCAGCGCGGCCGCATCCCGCACGCTCTCCCGGGTCCCGCGGCCTGCAGCCCTCCGGGCGCGGCGGGAGTCGAGCCGTTCGCGGGGCCGCCGGTGTCCGAGCTGATCGCGCAGCTGCTGCGCGCTGAGCCCTACCCCGCGGCTGGGCGCTTTGGTGGCGGCGGCGCCGTGCTGGGCATCGACAACGTGTGCGAGCTGGCGGCGCGCCTACTGTTCAGCACGGTCGAGTGGGCCCGCCACGCGCCCTTCTTCCCGGAGCTGCCGGCCGCCGACCAGGTGGCGCTGCTGCGGCTCAGCTGGAGCGAGCTGTTCGTGCTGAACGCGGCGCAGGCGGCGCTACCGCTGCACACGGCACCGCTGCTGGCTGCCGCGGGGCTGCACGCCGCGCCCATGGCTGCGGAGCGCGCGGTGGCCTTCATGGACCAGGTGCGTGCCTTCCAGGAGCAGGTGGACAAGCTGGGCCGCCTGCAGGTGGATGCTGCCGAGTACGGCTGCCTCAAGGCCATCGCGCTCTTCACGCCTG
Seq C2 exon
ATGCCTGTGGCCTTTCTGACCCAGCCCATGTTGAGAGCCTGCAGGAGAAGGCACAGGTGGCCCTCACCGAGTATGTCCGTGCCCAGTACCCATCACAGCCCCAGCGCTTTGGACGCCTGCTGCTGCGGCTGCCGGCCCTGCGTGCTGTGCCTGCATCCCTCATCTCCCAGCTTTTCTTCATGCGCCTGGTGGGCAAGACACCCATCGAGACGCTCATCCGGGACATGCTTCTGTCAGGGAGCACCTTTAACTGGCCCTATGGCTCGGGCTAGTGATGGTCCTTTCCAGGACACATGGAAGCTGGGGCCTTGTAGGGACCATGGGGACCAGGGCCCCAGCTTCTCTTCTGAGACTGACTTCTTTTTTTAAAGACTGTGAAATGTTTGGTTTGGTTTGTTTTTTAAATAATCATGAAACCAAAAAGATTCGGATCTCCCAGGCTCCAGCTTTGTCCTGGCAGCCCTTCGGCAGGGTGGGGCTGAGGGTCTGGAGCCAGCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000016892-'10-6,'10-4,12-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.054 C2=0.000
Domain overlap (PFAM):
C1:
PF0010513=zf-C4=PD(42.9=90.9)
A:
PF0010425=Hormone_recep=PU(65.0=67.6)
C2:
PF0010425=Hormone_recep=PD(34.4=69.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATCACCGGAACCAGTGTCAG
R:
AAAGGACCATCACTAGCCCGA
Band lengths:
351-876
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]