Special

GgaEX6007215 @ galGal3

Exon Skipping

Gene
ENSGALG00000002093 | F1P0M4_CHICK
Description
NA
Coordinates
chr10:771943-772676:+
Coord C1 exon
chr10:771943-772101
Coord A exon
chr10:772271-772502
Coord C2 exon
chr10:772571-772676
Length
232 bp
Sequences
Splice sites
3' ss Seq
TGGGTTCTGGCTGCCCCCAGGTG
3' ss Score
10.23
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
GGTGGTGAGCCCGAGCGGGCAGGCAGTGAGTACCAGGTGGCCCCATACCCAGCAGCTGGTCCTGAAAACGTCTACGAGACCTCACCCCTTCTTCTCTTCATGGCTGTCAAGTGGGCAAAGAACCTGCCTGTCTTCTCCAATCTGCCCTTCCGGGACCAG
Seq A exon
GTGATCCTGCTGGAGGAGGCGTGGAGCGAGCTGTTCCTGCTCTGTGCCATCCAGTGGTCCATGCCCCTGGAGAGCTGCCCGCTGCTGGCCGTCCCCGAGCCATCCCCTGGCAAGCTGCTGCCAGCCGCCGTGGACGTGCGGGCGCTGCAGGAGACCCTGGGGCGCTTCAAGGCATTGGCTGTCGATCCCACCGAATTTGCCTGCATGAAGGCTGTGGTGCTCTTCAAGCCAG
Seq C2 exon
AGACTCGCGGCCTGAAGGACCCCGAGCAGGTGGAGAACCTGCAGGACCAGTCGCAGGTGATGCTGGGCCAGCACAACCGCTCCCACTACCCCGGGCAGCCCGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002093-'5-7,'5-6,6-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact

ORF disruption upon sequence exclusion

No structure available
Features
Disorder rate (Iupred):
  C1=0.283 A=0.000 C2=0.194
Domain overlap (PFAM):

C1:
PF0010425=Hormone_recep=PU(18.5=64.2)
A:
PF0010425=Hormone_recep=FE(41.8=100)
C2:
PF0010425=Hormone_recep=FE(19.0=100)


Main Inclusion Isoform:


Main Skipping Isoform:
NA


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GCGGGCAGGCAGTGAGTA
R:
GGGTAGTGGGAGCGGTTGT
Band lengths:
236-468
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]