DreEX6102532 @ danRer10
Exon Skipping
Gene
ENSDARG00000045904 | nr2e3
Description
nuclear receptor subfamily 2, group E, member 3 [Source:ZFIN;Acc:ZDB-GENE-041114-63]
Coordinates
chr25:22179564-22180396:+
Coord C1 exon
chr25:22179564-22179745
Coord A exon
chr25:22179942-22180182
Coord C2 exon
chr25:22180291-22180396
Length
241 bp
Sequences
Splice sites
3' ss Seq
GACGTCCTTTATGATTATAGGTG
3' ss Score
6.84
5' ss Seq
CAGGTACAT
5' ss Score
7.79
Exon sequences
Seq C1 exon
TGGATGAGAACATTGATGTGACCAGTAATGAACCTGAAAGGAGTTCTCCGATGTACGGCAGCGCTCTCTACCCCTCACGTGAACCCGAGAGTGTATATGAGACCTCAGCTCGTCTTCTCTTTATGTCTGTTAAATGGGCCAAGAACCTGCCAGTATTTTCACATCTACCTTTCAGAGACCAG
Seq A exon
GTGATTCTGCTTGAGGAAGCATGGAGCGAGCTGTTTCTTCTATGTGCAATTCAGTGGTCTCTACCTCTGGACAACTGCCCTCTGCTGTCTCTGCCTGACCTCTCACCCACAGGACAGGGAAAGGGAAGCCCCTCTGCCTCAGATGTGAGGGTTCTGCAAGAGGTGTTTAGCCGGTTCAAGCCCTTGCAAGTGGATCCAACCGAGTTTGCCTGCTTGAAAGCCATTGTTTTGTTCAAACCAG
Seq C2 exon
AAACACGAGGACTTAAAGACCCCGAACAGGTAGAGAACCTACAAGATCAGTCCCAAGTACTGCTTGCTCAACATATTCACACACTTTACCCCAGTCAAGTTGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000045904-'5-5,'5-4,6-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.344 A=0.136 C2=0.083
Domain overlap (PFAM):
C1:
PF0010425=Hormone_recep=PU(23.8=78.7)
A:
PF0010425=Hormone_recep=FE(39.6=100)
C2:
PF0010425=Hormone_recep=FE(17.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGATGAGAACATTGATGTGACCA
R:
CTGGCAACTTGACTGGGGTAA
Band lengths:
288-529
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]