MmuEX6066471 @ mm10
Exon Skipping
Gene
ENSMUSG00000032292 | Nr2e3
Description
nuclear receptor subfamily 2, group E, member 3 [Source:MGI Symbol;Acc:MGI:1346317]
Coordinates
chr9:59946962-59948520:-
Coord C1 exon
chr9:59948363-59948520
Coord A exon
chr9:59947313-59947553
Coord C2 exon
chr9:59946962-59947067
Length
241 bp
Sequences
Splice sites
3' ss Seq
TGAGCCCTCTCTGATCACAGGTG
3' ss Score
7.64
5' ss Seq
CTGGTACTG
5' ss Score
4.41
Exon sequences
Seq C1 exon
CTGAAGAGAATATTGATGTCACCAGCAATGACCCCGAGTTCCCCGCATCCCCCTGCAGTCTGGATGGCATCCATGAGACATCTGCTCGCCTGCTCTTCATGGCTGTCAAATGGGCCAAAAACTTGCCTGTGTTTTCCAACCTGCCTTTCCGGGACCAG
Seq A exon
GTGATCTTGCTGGAAGAGGCATGGAATGAGCTTTTCCTTCTTGGAGCCATACAGTGGTCTCTGCCCCTGGACAGCTGCCCACTGCTGGCACCACCTGAGGCGTCCGGCAGCTCTCAGGGCAGGCTGGCCTTGGCCAGTGCAGAGACGCGCTTCCTGCAGGAAACCATCTCCCGGTTCCGAGCTCTGGCAGTGGATCCCACAGAGTTTGCCTGCCTGAAGGCCCTGGTCCTCTTCAAACCTG
Seq C2 exon
AAACACGAGGCCTGAAGGATCCTGAGCACGTGGAGGCTTTGCAGGACCAGTCCCAGGTGATGCTAAGCCAGCATAGCAAGGCTCACCACCCCAGCCAGCCTGTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032292-'11-14,'11-13,14-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.340 A=0.012 C2=0.194
Domain overlap (PFAM):
C1:
PF0010425=Hormone_recep=PU(23.8=90.6)
A:
PF0010425=Hormone_recep=FE(39.6=100)
C2:
PF0010425=Hormone_recep=FE(17.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGAATATTGATGTCACCAGCA
R:
CTCACAGGCTGGCTGGGG
Band lengths:
260-501
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types