GgaEX6007215 @ galGal4
Exon Skipping
Gene
ENSGALG00000002093 | NR2E3
Description
photoreceptor-specific nuclear receptor [Source:RefSeq peptide;Acc:NP_989925]
Coordinates
chr10:898303-899059:+
Coord C1 exon
chr10:898303-898484
Coord A exon
chr10:898654-898885
Coord C2 exon
chr10:898954-899059
Length
232 bp
Sequences
Splice sites
3' ss Seq
TGGGTTCTGGCTGCCCCCAGGTG
3' ss Score
10.23
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
TTGATGAGACAGTGGATGTGACGGGTGGTGAGCCCGAGCGGGCAGGCAGTGAGTACCAGGTGGCCCCATACCCAGCAGCTGGTCCTGAAAACGTCTACGAGACCTCAGCACGCCTTCTCTTCATGGCTGTCAAGTGGGCAAAGAACCTGCCTGTCTTCTCCAATCTGCCCTTCCGGGACCAG
Seq A exon
GTGATCCTGCTGGAGGAGGCGTGGAGCGAGCTGTTCCTGCTCTGTGCCATCCAGTGGTCCATGCCCCTGGAGAGCTGCCCGCTGCTGGCCGTCCCCGAGCCATCCCCTGGCAAGCTGCTGCCAGCCGCCGTGGACGTGCGGGCGCTGCAGGAGACCCTGGGGCGCTTCAAGGCATTGGCTGTCGATCCCACCGAATTTGCCTGCATGAAGGCTGTGGTGCTCTTCAAGCCAG
Seq C2 exon
AGACTCGCGGCCTGAAGGACCCCGAGCAGGTGGAGAACCTGCAGGACCAGTCGCAGGTGATGCTGGGCCAGCACAACCGCTCCCACTACCCCGGGCAGCCCGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002093-'5-7,'5-6,6-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.361 A=0.000 C2=0.194
Domain overlap (PFAM):
C1:
PF0010425=Hormone_recep=PU(24.5=80.3)
A:
PF0010425=Hormone_recep=FE(38.5=100)
C2:
PF0010425=Hormone_recep=FE(17.5=100)

Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGAGACAGTGGATGTGACGG
R:
GTAGTGGGAGCGGTTGTGC
Band lengths:
268-500
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]