BtaEX6051311 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000014236 | NR2E3
Description
Bos taurus nuclear receptor subfamily 2, group E, member 3 (NR2E3), mRNA. [Source:RefSeq mRNA;Acc:NM_001167900]
Coordinates
chr10:18633218-18634853:+
Coord C1 exon
chr10:18633218-18633393
Coord A exon
chr10:18634251-18634497
Coord C2 exon
chr10:18634748-18634853
Length
247 bp
Sequences
Splice sites
3' ss Seq
ACCCCCCTCTCTGGGCACAGGTG
3' ss Score
9.58
5' ss Seq
CAGGTCTTT
5' ss Score
2.36
Exon sequences
Seq C1 exon
CCGACGAGAATATCGATGTCACCAGCAATGATCCCGAGTTCCCCTCGTCCCCATACTCCTCCTCCTCTCCCTGTGCCCTGGACAGCATCCATGAGACGTCTGCTCGCCTGCTCTTCATGGCCGTCAAGTGGGCCAAGAACCTGCCAGTGTTCTCCAACCTGCCCTTCCGGGATCAG
Seq A exon
GTGATCCTGCTGGAAGAGGCGTGGAGTGAACTCTTCCTCCTTGGAGCCATCCAGTGGTCTCTGCCTCTGGACAATTGCCCACTGCTGGCCCTGCCCGAGGCCTCTGCTGGCGGCAGCTCTCAGGGCCGACTGGTGCTGGCCAGTGCGGAGACTCGAATCCTGCAGGAAACCATCTCACGGTTCCGGGCACTGGCAGTGGACCCCACGGAGTTCGCCTGCATGAAGGCCCTGGTCCTCTTCAAACCAG
Seq C2 exon
AAACACGCGGCCTGAAGGATCCTGAGCACGTGGAGGCCTTGCAGGACCAGTCTCAGGTGATGCTCAGCCAGCACAGCAAGGCCCATCACCCCAGCCAGCCTGTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000014236-'6-5,'6-4,7-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.356 A=0.000 C2=0.167
Domain overlap (PFAM):
C1:
PF0010425=Hormone_recep=PU(23.5=81.4)
A:
PF0010425=Hormone_recep=FE(40.2=100)
C2:
PF0010425=Hormone_recep=FE(17.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGAATATCGATGTCACCAGCA
R:
CTCACAGGCTGGCTGGGG
Band lengths:
277-524
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]