DmeEX6020043 @ dm6
Exon Skipping
Gene
FBgn0003651 | svp
Description
The gene seven up is referred to in FlyBase by the symbol Dmelsvp (CG11502, FBgn0003651). It is a protein_coding_gene from Dmel. It has 6 annotated transcripts and 6 polypeptides (5 unique). Gene sequence location is 3R:12258737..12302785. Its molecular function is described by 9 unique terms, many of which group under: transcription regulator activity; protein binding; DNA-binding transcription factor activity; binding; DNA-binding transcription factor activity, RNA polymerase II-specific. It is involved in the biological process described with 18 unique terms, many of which group under: regulation of biological quality; chemical homeostasis; organic substance biosynthetic process; cardiac cell fate commitment; locomotion. 72 alleles are reported. The phenotypes of these alleles manifest in: 7-1M; subesophageal ganglion neuron; intracellular organelle; abdominal larval oenocyte group; mechanosensory system. The phenotypic classes of alleles include: developmental rate defective; phenotype; cell number defective; immune response defective. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of moderate expression to a trough of extremely low expression. Peak expression observed within 06-24 hour embryonic stages, at stages throughout the larval period, at stages throughout the pupal period, in adult male stages.
Coordinates
chr3R:12290209-12300636:+
Coord C1 exon
chr3R:12290209-12290358
Coord A exon
chr3R:12294008-12294559
Coord C2 exon
chr3R:12300479-12300636
Length
552 bp
Sequences
Splice sites
3' ss Seq
TTTTCCCTCTTTCTTTTCAGCTG
3' ss Score
12.92
5' ss Seq
CCGGTAAGT
5' ss Score
10.91
Exon sequences
Seq C1 exon
GTTGCAAATCTTTCTTCAAGCGCTCGGTGCGACGTAATCTAACTTACTCTTGCCGCGGCAGCAGAAACTGTCCCATAGATCAACACCATCGCAATCAATGTCAATATTGTCGATTGAAGAAGTGCCTCAAAATGGGCATGAGACGCGAAG
Seq A exon
CTGTTCAACGTGGACGCGTACCACCCACTCAGCCCGGTCTGGCCGGCATGCATGGGCAGTACCAGATTGCCAACGGGGATCCCATGGGCATTGCCGGCTTTAACGGGCACTCGTACCTCAGTTCCTACATCTCGCTCCTGCTGCGGGCGGAACCGTATCCGACTTCGCGATATGGCCAGTGCATGCAACCCAACAACATTATGGGCATCGACAACATCTGCGAACTGGCCGCCCGACTGCTCTTCTCGGCGGTCGAGTGGGCCAAGAACATACCCTTCTTCCCGGAGCTGCAGGTGACCGACCAGGTGGCCCTGCTCCGGCTCGTCTGGTCAGAGCTCTTCGTCCTAAACGCCAGCCAGTGCTCCATGCCGCTCCATGTGGCGCCACTGCTGGCCGCCGCCGGACTTCATGCCTCCCCGATGGCCGCCGATCGTGTGGTGGCCTTCATGGACCACATCCGCATCTTCCAGGAGCAGGTGGAGAAGCTGAAGGCGCTGCATGTCGACTCCGCGGAGTACTCCTGCCTCAAGGCGATCGTGCTCTTCACCACCG
Seq C2 exon
ATGCCTGCGGCCTGTCCGATGTGACGCACATTGAATCCCTGCAAGAGAAGTCGCAGTGCGCCCTCGAGGAATACTGCCGGACCCAGTATCCCAACCAGCCCACGAGATTCGGCAAGCTGCTTCTCAGACTGCCATCGCTGCGAACGGTCTCCTCACAA
VastDB Features
Vast-tools module Information
Secondary ID
FBgn0003651-'2-6,'2-5,4-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.048 A=0.103 C2=0.000
Domain overlap (PFAM):
C1:
PF0010513=zf-C4=PD(68.6=94.1)
A:
PF0010425=Hormone_recep=PU(67.5=71.9)
C2:
PF0010425=Hormone_recep=FE(26.4=100)
Main Inclusion Isoform:
FBpp0303610

Main Skipping Isoform:
NA
Other Inclusion Isoforms:
FBpp0082034, FBpp0082035, FBpp0082036
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATCTTTCTTCAAGCGCTCGGT
R:
TTGTGAGGAGACCGTTCGCAG
Band lengths:
302-854
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Neural diversity
- Neurogenesis
- Neuronal activity
- Splicing factor regulation (brain)
- Splicing factor regulation (SL2)