HsaEX6076635 @ hg19
Exon Skipping
Gene
ENSG00000185551 | NR2F2
Description
nuclear receptor subfamily 2, group F, member 2 [Source:HGNC Symbol;Acc:7976]
Coordinates
chr15:96875197-96883492:+
Coord C1 exon
chr15:96875197-96875776
Coord A exon
chr15:96877305-96877832
Coord C2 exon
chr15:96880577-96883492
Length
528 bp
Sequences
Splice sites
3' ss Seq
GTCTCCTTTCCTCCCCGCAGCGG
3' ss Score
12.39
5' ss Seq
CAGGTAGGA
5' ss Score
9.79
Exon sequences
Seq C1 exon
CGCCCCGCCGCCGCCCGCAGCCAGGGGAGCAGGAAGTCCGGACGCAGCCCCCATAGATATGGCAATGGTAGTCAGCACGTGGCGCGACCCCCAGGACGAGGTGCCCGGCTCACAGGGCAGCCAGGCCTCGCAGGCGCCGCCCGTGCCCGGCCCGCCGCCCGGCGCCCCGCACACGCCACAGACGCCCGGCCAAGGGGGCCCAGCCAGCACGCCAGCCCAGACGGCGGCCGGTGGCCAGGGCGGCCCTGGCGGCCCGGGTAGCGACAAGCAGCAGCAGCAGCAACACATCGAGTGCGTGGTGTGCGGAGACAAGTCGAGCGGCAAGCACTACGGCCAGTTCACGTGCGAGGGCTGCAAGAGCTTCTTCAAGCGCAGCGTGCGGAGGAACCTGAGCTACACGTGCCGCGCCAACCGGAACTGTCCCATCGACCAGCACCATCGCAACCAGTGCCAGTACTGCCGCCTCAAAAAGTGCCTCAAAGTGGGCATGAGACGGGAAG
Seq A exon
CGGTGCAGAGGGGCAGGATGCCGCCGACCCAGCCGACCCACGGGCAGTTCGCGCTGACCAACGGGGATCCCCTCAACTGCCACTCGTACCTGTCCGGATATATTTCCCTGCTGTTGCGCGCGGAGCCCTATCCCACGTCGCGCTTCGGCAGCCAATGCATGCAGCCCAACAACATCATGGGTATCGAGAACATTTGCGAACTGGCCGCGAGGATGCTCTTCAGCGCCGTCGAGTGGGCCCGGAACATCCCCTTCTTCCCCGACCTGCAGATCACGGACCAGGTGGCCCTGCTTCGCCTCACCTGGAGCGAGCTGTTTGTGTTGAATGCGGCGCAGTGCTCCATGCCCCTCCACGTCGCCCCGCTCCTGGCCGCCGCCGGCCTGCATGCTTCGCCCATGTCCGCCGACCGGGTGGTCGCCTTTATGGACCACATACGGATCTTCCAAGAGCAAGTGGAGAAGCTCAAGGCGCTGCACGTTGACTCAGCCGAGTACAGCTGCCTCAAGGCCATAGTCCTGTTCACCTCAG
Seq C2 exon
ATGCCTGTGGTCTCTCTGATGTAGCCCATGTGGAAAGCTTGCAGGAAAAGTCTCAGTGTGCTTTGGAAGAATACGTTAGGAGCCAGTACCCCAACCAGCCGACGAGATTCGGAAAGCTTTTGCTTCGCCTCCCTTCCCTCCGCACCGTCTCCTCCTCAGTCATAGAGCAATTGTTTTTCGTCCGTTTGGTAGGTAAAACCCCCATCGAAACCCTCATCCGGGATATGTTACTGTCCGGCAGCAGTTTTAACTGGCCGTATATGGCAATTCAATAAATAAATAAAATAAGAAGGGGGAGTGAAACAGAGAAAGAAAAGGCAAAAGACTGGTTTGTTTGCTTAATTTCCTTCTGTTAAGAAAGGATATAAAAGGATGTTACAAGTTTGCTAAAAGAAGAGAGGGGAAGAATTTAATGGACTGTGAATTTCAAAAAAAAAAAAAAAGACTGTCAAATGAACTTTTACAGAATGCATTAAAAAAAAAAAAAAACTCCTGTGTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000185551-'2-6,'2-5,6-6=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.508 A=0.088 C2=0.000
Domain overlap (PFAM):
C1:
PF0010513=zf-C4=WD(100=47.3)
A:
PF0010425=Hormone_recep=PU(67.3=77.2)
C2:
PF0010425=Hormone_recep=PD(32.1=68.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CAAGCACTACGGCCAGTTCAC
R:
ATGACTGAGGAGGAGACGGTG
Band lengths:
342-870
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)