GgaEX1040295 @ galGal4
Exon Skipping
Gene
ENSGALG00000007000 | NR2F2
Description
COUP transcription factor 2 [Source:UniProtKB/Swiss-Prot;Acc:Q90733]
Coordinates
chr10:15328163-15333861:+
Coord C1 exon
chr10:15328163-15328735
Coord A exon
chr10:15330079-15330606
Coord C2 exon
chr10:15333587-15333861
Length
528 bp
Sequences
Splice sites
3' ss Seq
TTCTTCTTTATTCACTGCAGCGG
3' ss Score
8.63
5' ss Seq
CAGGTAGGC
5' ss Score
9.88
Exon sequences
Seq C1 exon
TGCAGAGCAAAGCAAACAAACTTTGAAAATAAAGGGGGAACAGGAAGTTTGGCAACGGTGTCCAATAGATATGGCAATGGTAGTCGGTGCGTGGCGAGACCCCCAGGACGATGTGCCCGGAGCTCAGGGAACGCAGCCAGCGCCCGCCCCGCCGGTGCAGGGCCCCCCGGCCGGGACCCCGCACACCCCGCAGACCCCGGGGCCCGGCGGCCCCCCCAGCACGCCAGCGCAGAGCAACGCGGCGAGCCAGCAGAGCCAAGGGGACAAGCAGCAGCAGCAGCAGCACATTGAGTGCGTGGTTTGTGGGGACAAGTCTAGTGGCAAACACTACGGCCAGTTTACCTGCGAGGGTTGCAAGAGTTTCTTCAAGCGGAGTGTAAGGAGGAATCTCAGCTACACTTGTCGTGCCAACAGGAACTGTCCCATTGACCAGCACCACCGCAATCAGTGTCAGTACTGCCGCCTCAAAAAATGCCTCAAAGTTGGCATGAGACGGGAAG
Seq A exon
CGGTCCAGAGGGGCAGAATGCCACCCACACAGCCAACTCACGGTCAGTTCGCCTTGACAAACGGGGACCCTCTCAACTGCCATTCCTACCTATCCGGATATATCTCCCTTCTTCTGAGAGCAGAGCCCTACCCCACCTCCCGCTTTGGCAGTCAGTGCATGCAACCCAACAACATCATGGGCATCGAGAACATTTGCGAACTGGCAGCTCGGATGCTCTTCAGCGCGGTGGAGTGGGCCAGGAATATCCCCTTCTTCCCAGACCTGCAGATCACAGACCAGGTGGCCCTGCTCAGGCTGACCTGGAGCGAGTTGTTCGTGCTCAACGCCGCCCAGTGCTCCATGCCCCTCCACGTAGCCCCGCTGCTGGCAGCCGCCGGCCTCCACGCTTCGCCAATGTCTGCTGACCGAGTGGTCGCCTTTATGGACCACATACGAATCTTCCAAGAGCAAGTAGAAAAACTGAAAGCGTTGCATGTCGACTCCGCAGAATATAGCTGTTTAAAGGCCATAGTCCTCTTCACCTCAG
Seq C2 exon
ATGCCTGTGGTCTCTCTGATGTAGCCCATGTTGAAAGTTTACAGGAGAAGTCACAGTGTGCTTTGGAAGAGTATGTTAGGAGCCAGTATCCCAACCAGCCAACACGATTCGGGAAGCTATTACTACGTCTCCCCTCCCTTCGCACTGTCTCCTCTTCTGTCATAGAGCAATTGTTTTTCGTCCGTTTGGTAGGTAAAACCCCCATAGAAACCCTAATCAGGGATATGTTACTGTCTGGCAGCAGTTTTAACTGGCCTTACATGTCCATTCAATAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007000-'4-5,'4-1,12-5
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.486 A=0.085 C2=0.000
Domain overlap (PFAM):
C1:
PF0010513=zf-C4=WD(100=48.6)
A:
PF0010425=Hormone_recep=PU(67.3=74.6)
C2:
PF0010425=Hormone_recep=PD(32.1=68.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TGGGGACAAGTCTAGTGGCAA
R:
ACAGAAGAGGAGACAGTGCGA
Band lengths:
357-885
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]