MmuEX6011488 @ mm10
Exon Skipping
Gene
ENSMUSG00000030551 | Nr2f2
Description
nuclear receptor subfamily 2, group F, member 2 [Source:MGI Symbol;Acc:MGI:1352452]
Coordinates
chr7:70351944-70366735:-
Coord C1 exon
chr7:70366093-70366735
Coord A exon
chr7:70357763-70358290
Coord C2 exon
chr7:70351944-70354931
Length
528 bp
Sequences
Splice sites
3' ss Seq
TGTCTCCTTTCCTCCTGCAGCTG
3' ss Score
13.08
5' ss Seq
CAGGTAGGA
5' ss Score
9.79
Exon sequences
Seq C1 exon
GTGTTTTTAAAGTCTCCTCTTTCCAGCCCCAAACAAGGTGTAACAACGCACTCTTCCTTCTAAGGCATCAGATGAGAGACAAGGATCACTCCAGACAGCTCCTACCTACGGTTTGGGGTTTTTTTTTCTTAAAGGCGAGGCTTGCATTCCTCAGCAGCTATGTACAAAGCTCCCTGAAGCTGTCTCTCTCTCTCTAAAGTTAGTGTGCAGGCTTTTCCAACGGCTGAGAGCGCCTGGTACACAGGGAAGCAGTTCCTTGAGGTGGAAGATCTCTTCTTTCACCTTTCTTTTTCCCTGCAGACTAATGCCTACTTTTTTATCAGTTTGCACAATCGCTTAGATAAACACCGAGGAGGAGAGTCTCTTTAATTATCAAAGACACATCTTTTCAGGGGGCCAACAAAGCATTTATTTCACCCGCCAAACTAAAGGAGAGTTATTCCAGTTTAGAAGGAAGATGCAAGCGGTTTGGGACCTTGAACAAGGCAAATATGGTTTTG
Seq A exon
CTGTACAGAGAGGCAGGATGCCTCCTACCCAGCCTACCCACGGGCAGTTTGCCCTGACCAACGGGGACCCCCTCAACTGCCACTCGTACCTGTCCGGATATATTTCCCTGCTGCTGCGCGCGGAGCCCTACCCCACGTCGCGCTTCGGCAGTCAGTGCATGCAGCCTAACAACATCATGGGCATCGAGAACATTTGCGAACTGGCCGCACGGATGCTCTTCAGCGCCGTTGAGTGGGCCCGGAACATCCCCTTCTTCCCTGACCTGCAGATCACGGACCAGGTGGCCCTCCTTCGCCTCACCTGGAGCGAGCTGTTCGTGTTGAATGCGGCCCAGTGCTCCATGCCCCTCCATGTCGCCCCGCTCCTTGCCGCTGCTGGCCTGCACGCTTCACCCATGTCAGCCGACCGGGTGGTCGCTTTTATGGACCACATACGGATCTTCCAAGAGCAAGTGGAGAAGCTCAAGGCACTGCACGTCGACTCCGCCGAGTATAGCTGCCTCAAGGCCATAGTCCTGTTCACCTCAG
Seq C2 exon
ATGCCTGTGGTCTGTCTGATGTAGCCCATGTGGAAAGCTTGCAGGAAAAGTCCCAGTGTGCTTTGGAAGAGTACGTTAGGAGCCAGTACCCCAACCAGCCAACACGGTTCGGAAAGCTCTTGCTTCGTCTCCCTTCCCTCCGCACGGTCTCCTCCTCAGTCATAGAGCAATTGTTTTTCGTCCGTTTGGTAGGTAAAACCCCCATCGAAACCCTCATCCGGGATATGTTACTGTCCGGCAGCAGTTTTAACTGGCCATATATGGCAATTCAATAAATAAATCAATCAAAATAAGGGGGAGTGAAACAGAGAAAGAAAAGGCAAAAGACTGGTTTTGTTTGCTTAATTTCCTTCTGTTAAGAAAGGATGTTACAAGTTTGCTAAAAAGAAGAGAGGGGAAGAATTTAATGGACTGTGAATTTCAAAAAGGAGAGAGAGAAAGAGAGAGACTGCCAAATGAACTTTTACAGAATGCATTAAAAAAAAAGAAAGAAAACAACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030551-'0-8,'0-6,6-8
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.071 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0010425=Hormone_recep=PU(67.3=74.6)
C2:
PF0010425=Hormone_recep=PD(32.1=68.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGCTCCCTGAAGCTGTCTCT
R:
ACATCAGACAGACCACAGGCA
Band lengths:
356-884
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types