RnoEX6003285 @ rn6
Exon Skipping
Gene
ENSRNOG00000010308 | Nr2f2
Description
nuclear receptor subfamily 2, group F, member 2 [Source:RGD Symbol;Acc:69305]
Coordinates
chr1:131448447-131454689:-
Coord C1 exon
chr1:131454064-131454689
Coord A exon
chr1:131451933-131452460
Coord C2 exon
chr1:131448447-131449153
Length
528 bp
Sequences
Splice sites
3' ss Seq
TGTCTCCTTTCCTCCTGCAGCTG
3' ss Score
13.08
5' ss Seq
CAGGTAGGA
5' ss Score
9.79
Exon sequences
Seq C1 exon
CCACCCCGCCGCCGCCCGCAGCCAGGGGAGCAGAAGTCCGGACGCGGCCCCCATAGATATGGCAATGGTAGTCAGCACGTGGCGCGACCCCCAGGACGAGGTGCCCGGCTCTCAGGGCAGCCAGGCCTCGCAGGCGCCGCCCGTGCCGGGCCCGCCGCCTGGCGCCCCGCACACGCCACAGACGCCGGGCCAAGGGGGCCCGGCCAGCACGCCGGCCCAGACAGCGGCTGGCAGCCAGGGCGGCCCTGGCGGCCCAGGCAGCGACAAACAGCAGCAGCAGCAGCACATCGAGTGCGTGGTGTGCGGGGACAAGTCGAGCGGCAAGCACTACGGCCAGTTCACGTGCGAGGGCTGCAAGAGCTTCTTCAAGCGCAGCGTGCGGAGGAACCTGAGCTACACGTGCCGCGCCAACCGGAACTGTCCCATCGACCAGCACCACCGCAACCAGTGCCAGTACTGCCGCCTCAAAAAGTGCCTCAAAGTGGGCATGAGACGGGAAG
Seq A exon
CTGTACAGAGGGGCAGGATGCCGCCCACCCAGCCTACTCACGGGCAGTTTGCACTGACCAACGGGGACCCCCTCAACTGCCACTCGTACCTGTCCGGATATATTTCCCTGCTGCTGCGCGCGGAGCCCTACCCCACGTCGCGCTTCGGCAGTCAGTGCATGCAGCCTAACAACATCATGGGCATCGAGAACATTTGCGAACTGGCCGCACGGATGCTCTTCAGCGCCGTTGAGTGGGCCCGGAACATCCCCTTCTTCCCTGACCTGCAGATCACGGACCAGGTGGCCCTCCTTCGCCTCACCTGGAGCGAGCTGTTCGTGTTGAATGCAGCACAGTGCTCCATGCCCCTCCATGTTGCCCCGCTCCTTGCCGCTGCTGGCCTGCACGCTTCACCCATGTCAGCCGACCGGGTGGTCGCCTTTATGGACCACATACGGATCTTCCAAGAGCAAGTGGAGAAGCTCAAGGCACTGCACGTCGACTCCGCCGAGTACAGCTGCCTCAAGGCCATAGTCCTGTTCACCTCAG
Seq C2 exon
ATGCCTGTGGTCTGTCTGATGTAGCCCACGTGGAAAGTTTGCAGGAAAAGTCCCAGTGTGCTTTGGAAGAGTACGTTAGGAGCCAGTACCCCAACCAGCCAACACGGTTCGGAAAGCTTTTGCTTCGTCTCCCTTCCCTCCGCACGGTCTCCTCCTCAGTCATAGAGCAATTGTTTTTCGTCCGTTTGGTAGGTAAAACCCCCATCGAAACCCTCATCCGGGATATGTTACTGTCCGGCAGCAGTTTTAACTGGCCATACATGGCAATTCAATAAATAAATAAATCAAAATAAGGGGGAGTGAAACAGAGAAAGAAAAGGCAAAAGACTGGTTTTTGTTTGCTTAATTTCCTTCTGTTAAGAAAGGATGTTACAAGTTTGCTAAAAGAAGAGAGGGGAAGAACTTAATGGACTTTGATTTCAAAAAAAGGACAGAGAGAAAGAAAGAGAAAGAGACTGCCAAATGAACTTTTACAGAATGCATTAAAAAAAAGAAAACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010308-'1-6,'1-3,4-6=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.541 A=0.066 C2=0.000
Domain overlap (PFAM):
C1:
PF0010513=zf-C4=WD(100=47.3)
A:
PF0010425=Hormone_recep=PU(67.3=74.6)
C2:
PF0010425=Hormone_recep=PD(32.1=68.5)
Main Skipping Isoform:
ENSRNOT00000014152fB9829
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAGCACTACGGCCAGTTCAC
R:
ATGACTGAGGAGGAGACCGTG
Band lengths:
342-870
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]