BtaEX6076555 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000018007 | NR2F2
Description
Bos taurus nuclear receptor subfamily 2, group F, member 2 (NR2F2), mRNA. [Source:RefSeq mRNA;Acc:NM_174402]
Coordinates
chr21:10793104-10800183:-
Coord C1 exon
chr21:10799457-10800183
Coord A exon
chr21:10797318-10797845
Coord C2 exon
chr21:10793104-10794595
Length
528 bp
Sequences
Splice sites
3' ss Seq
GTCTCCTTTCCTCCCCGCAGCCG
3' ss Score
12.15
5' ss Seq
CAGGTAGGA
5' ss Score
9.79
Exon sequences
Seq C1 exon
GAGCCCGCCGCCGCCCGCAGCCAGGGGAGCAGGAAGTCCGGACGCGGCCCCCATAGATATGGCAATGGTAGTCAGCACGTGGCGCGACCCCCAGGACGAGGTGCCCGGCTCTCAGGGCAGCCAGGCCTCGCAGGCGCCGCCCGTGCCCGGCCCGCCGCCCGGCGCCCCGCACACGCCACAGACGCCCGGCCAAGGGGGCCCGGCCAGCACGCCGGCCCAGACGGCAGCCGGCGGCCAGGGCGGCCCTGGCGGGCCGGGTAGCGACAAGCAGCAGCAGCAGCAGCACATCGAGTGCGTGGTGTGCGGGGACAAGTCGAGCGGCAAGCACTACGGCCAGTTCACGTGCGAAGGCTGCAAGAGCTTCTTCAAGCGCAGCGTGCGGAGGAACCTGAGCTACACGTGCCGCGCCAACCGGAACTGTCCCATCGACCAGCACCACCGCAACCAGTGCCAGTACTGCCGCCTCAAAAAGTGCCTCAAAGTGGGCATGAGACGGGAAG
Seq A exon
CCGTGCAGAGGGGCAGGATGCCGCCCACCCAGCCGAGCCACGGGCAGTTCGCGCTGACCAACGGGGACCCCCTCAACTGCCACTCCTACCTATCCGGATATATTTCCCTGCTGCTGCGCGCGGAGCCCTACCCCACGTCGCGCTTCGGCAGCCAGTGCATGCAGCCCAACAATATCATGGGCATCGAGAACATTTGCGAACTGGCCGCGCGGATGCTCTTCAGCGCCGTCGAGTGGGCCCGGAACATCCCCTTCTTCCCTGACCTGCAGATCACCGACCAGGTGGCCCTGCTCCGCCTCACCTGGAGCGAGCTGTTCGTTCTGAACGCGGCCCAGTGCTCCATGCCCCTCCACGTCGCCCCGCTCCTGGCCGCCGCCGGCCTCCACGCCTCGCCCATGTCCGCCGACCGGGTGGTCGCCTTTATGGACCACATACGGATCTTCCAAGAGCAAGTGGAGAAGCTAAAAGCGCTGCACGTCGACTCCGCCGAGTACAGCTGCCTCAAGGCCATAGTCCTGTTCACCTCAG
Seq C2 exon
ATGCCTGTGGTCTCTCTGATGTAGCCCATGTGGAAAGCTTGCAGGAAAAGTCCCAGTGTGCTTTGGAAGAATACGTTAGGAGCCAGTACCCCAACCAACCAACACGATTTGGAAAGCTTTTGCTTCGCCTCCCTTCCCTCCGCACGGTCTCCTCCTCAGTCATAGAGCAATTGTTTTTCGTCCGTTTGGTAGGTAAAACCCCCATCGAAACCCTCATCCGGGATATGTTACTGTCTGGCAGCAGTTTTAACTGGCCGTATATGGCAATTCAATAAATAAATCAATCAAAATAAGAAGGGGGAGTGAAACAGAGAGAAAGAAAAGGCAAAAGACTGGTTTGTTTGCTTAAATTCCTTCTGTTAAGAAAGGATATAAAAGGATGTTACAAGTTTGCTAAAAGAAGAGAGGGGAAGAATTTAATGGACTGTGAATTTCCAAAAAAAAAAAAAGACTGTCGAATGAACTTTTACAGAATGCATTAAAAAAAAAAAAAACTCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018007-'1-6,'1-3,6-6=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.514 A=0.071 C2=0.000
Domain overlap (PFAM):
C1:
PF0010513=zf-C4=WD(100=47.3)
A:
PF0010425=Hormone_recep=PU(67.3=74.6)
C2:
PF0010425=Hormone_recep=PD(32.1=68.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAGCACTACGGCCAGTTCAC
R:
ATGACTGAGGAGGAGACCGTG
Band lengths:
342-870
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]