DreEX0051433 @ danRer10
Exon Skipping
Gene
ENSDARG00000017168 | nr2f1b
Description
nuclear receptor subfamily 2, group F, member 1b [Source:ZFIN;Acc:ZDB-GENE-040426-1438]
Coordinates
chr10:43950333-43961400:+
Coord C1 exon
chr10:43950333-43951004
Coord A exon
chr10:43952927-43953454
Coord C2 exon
chr10:43959815-43961400
Length
528 bp
Sequences
Splice sites
3' ss Seq
ATCTCTCTGTGTTCTGATAGCGG
3' ss Score
7.72
5' ss Seq
CAGGTAGGC
5' ss Score
9.88
Exon sequences
Seq C1 exon
CTCCCATTGGATCTGATTCATCTGGGGTTTCCGATCGTCCCTTTTACGCACGGAGTTGCTTCAAATCGCGCGTTTAGGGAAATGCGTGGATAAAACCGGCTTTCTTGGTTAATTCGCGTAAAAGATTCCAGCCATGGCCATGGTGGTGAGCGCGTGGAGAGATCCGCAGGAGGAGCTGGCAGCGGTGGATGATCAGAGCGCGGCCGGGAGAGAGCACCTCCAGCACCGGCACTCGCCGAAGTCCGCGGAGGAAAAAGCGCAGATCGCGGCGCAAAACCAGCAGCACGTCGAGTGTGTGGTGTGCGGGGATAAATCCAGCGGGAAGCACTACGGACAGTTCACCTGCGAGGGATGCAAAAGTTTCTTCAAGCGAAGTGTCCGGCGGAATTTATCGTACACGTGCCGCGCCAACAGAAACTGCCCGGTGGATCAGCACCACCGCAACCAGTGCCAGTACTGCCGCCTGAAGAAGTGCCTGAAAGTGGGCATGAGACGCGAAG
Seq A exon
CGGTTCAGCGAGGCAGAATGCCACCGAACCAGCCGAACCCGAGCCATTACGCGCTGACCAACGGAGATCACCTGAACGGCCAGTGCTATTTATCCGGATACATATCGCTTCTCCTCCGGGCCGAGCCCTATCCAGCCTCGAGATACGGCAACCAGTGCATGCAGTCCGGCAACATCATGGGCATAGAGAACATCTGCGAGCTGGCGGCCCGTCTGCTCTTCAGCGCGGTGGAGTGGGCCAGGAACATCCCGTTCTTCCCCGATCTGCAAATCACGGATCAGGTGTCTCTGCTCAGACTCACCTGGAGCGAGTTGTTCGTGCTGAACGCCGCGCAGAGCTCTATGCCGCTGCACGTGGCCCCTCTGCTGGCCGCCGCAGGCCTGCACGCGTCGCCGATGTCCGCGGACCGAGTCGTGGCCTTCATGGATCATATTCGCTTCTTCCAGGAGCAGGTGGAGAAACTGAAGGCCCTGCAGGTGGACTCCGCCGAATACAGCTGTGCCAAAGCCATAGTGCTGTTCACCTCAG
Seq C2 exon
ATGCATGCGGCCTTTCAGACATCCCGCACATTGAAGGTCTCCAGGAGAAATCTCAATGTGCCCTGGAGGAGTATGTGCGGAGTCAGTACCCGAACCAGCCCACCCGCTTCGGCAAACTGCTGCTCCGGCTCCCGGCGCTCCGCATGGTCTCCTCCTCCGTCATTGAACAGCTTTTCTTCGTTCGGCTGGTGGGAAAAACACCCATTGAGACGCTCATCAGGGATATGCTGCTATCTGGGAGCAGTTTCAACTGGCCCTACATGCCTATTCAATAACATTTGGTGAGCATTTACAGACTCTAAAGAAAACTAAACAGGCAAGGACGACGCAGAAAGTCGGACTCTCTTAACATCACACTGTAAAAAAATCCACGGTTTCCGTATTTTAAGTGTTTATTGCTTTTTATGGATTTGTATAAGGTCTTTGCTACCCCAGCAAGCATCTTTGTTCTTAAAAGATGTCTATAGACGTCTAAACATAGTCGTATTGGCTAAAACAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000017168-'0-4,'0-1,1-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.244 A=0.090 C2=0.000
Domain overlap (PFAM):
C1:
PF0010513=zf-C4=WD(100=56.9)
A:
PF0010425=Hormone_recep=PU(67.3=74.6)
C2:
PF0010425=Hormone_recep=PD(32.1=68.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACTACGGACAGTTCACCTGC
R:
GCTGTTCAATGACGGAGGAGG
Band lengths:
346-874
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]