MmuEX6059418 @ mm10
Exon Skipping
Gene
ENSMUSG00000069171 | Nr2f1
Description
nuclear receptor subfamily 2, group F, member 1 [Source:MGI Symbol;Acc:MGI:1352451]
Coordinates
chr13:78188973-78199757:-
Coord C1 exon
chr13:78198120-78199757
Coord A exon
chr13:78195162-78195689
Coord C2 exon
chr13:78188973-78190013
Length
528 bp
Sequences
Splice sites
3' ss Seq
TCTCTCTTTCTTTTTATCAGCGG
3' ss Score
8.98
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
TCGGCGAGCAGCTCGGCTCCCCCCAGCGCTCCCTGGGCCCAAAGATATGGCAATGGTAGTTAGCAGCTGGCGAGATCCGCAGGACGACGTGGCCGGGGGCAACCCCGGCGGCCCCAACCCCGCAGCGCAGGCAGCCCGCGGCGGCGGCGGCGGCGAGCAGCAGCAGGCGGGCTCCGGCGCGCCGCACACGCCGCAGACCCCGGGCCAGCCCGGAGCGCCCGCCACCCCCGGCACGGCAGGGGACAAGGGCCAGGGCCCGCCCGGTTCAGGCCAGAGCCAGCAGCACATCGAGTGCGTGGTGTGCGGGGACAAGTCGAGCGGCAAGCACTACGGCCAATTCACCTGCGAGGGCTGCAAAAGTTTCTTCAAGAGGAGCGTCCGCAGGAACTTAACTTACACATGCCGTGCCAACAGGAACTGTCCCATCGACCAGCACCACCGCAACCAGTGCCAATACTGCCGCCTCAAGAAGTGCCTCAAAGTGGGCATGAGGCGGGAAG
Seq A exon
CGGTTCAGCGAGGAAGAATGCCTCCAACCCAGCCCAATCCAGGCCAGTATGCACTCACAAACGGGGATCCTCTCAATGGCCACTGCTACCTGTCTGGCTACATTTCTCTGCTGCTGCGCGCAGAGCCCTACCCCACGTCGCGTTATGGCAGCCAGTGCATGCAGCCCAACAACATCATGGGCATCGAGAACATCTGCGAGCTGGCAGCCCGCCTCCTCTTCAGCGCCGTCGAGTGGGCCCGCAACATCCCGTTCTTCCCGGATCTGCAGATCACGGACCAGGTGTCTCTGCTGCGCCTCACCTGGAGCGAGCTGTTCGTGCTCAACGCGGCCCAGTGCTCCATGCCCCTGCACGTGGCGCCGCTGCTGGCCGCAGCCGGCCTGCACGCCTCGCCCATGTCCGCGGACCGCGTCGTGGCCTTCATGGACCACATCCGCATCTTTCAGGAACAGGTGGAGAAGCTCAAGGCGCTGCACGTCGACTCTGCCGAGTACAGCTGCCTCAAAGCCATCGTGCTATTCACGTCAG
Seq C2 exon
ATGCTTGTGGCCTGTCGGATGCTGCCCACATCGAAAGCCTGCAGGAGAAATCACAGTGTGCCCTGGAGGAGTATGTGAGAAGCCAGTACCCCAACCAGCCCAGCCGCTTTGGCAAACTGCTGCTGCGATTGCCCTCTCTTCGCACAGTGTCCTCCTCTGTCATCGAGCAACTCTTCTTCGTACGTTTGGTAGGTAAAACTCCCATCGAAACTCTCATCCGAGATATGTTGCTGTCAGGGAGCAGTTTCAACTGGCCTTACATGTCCATCCAGTGTTCCTAGACTTTGGGTGTTTCCCACCCAATCCTGCTCCCTGACTCCCTAGAGACTAAGAGGACTCTCCCTGACCAAGGACTAAAAAGCCTTTGGGGATGCTGGTATGATGGACCAGGCAGGCCAGGCAGACGGGAGGAGGGCTGGGAACAAGAGCAGCCCACTCTGCAGGAATGCAACCTGAGCTGCAAACCAGGAGAAAAGGAGACTCATTTAGGATCTGATCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000069171-'0-6,'0-4,9-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.533 A=0.078 C2=0.000
Domain overlap (PFAM):
C1:
PF0010513=zf-C4=WD(100=46.1)
A:
PF0010425=Hormone_recep=PU(67.3=74.6)
C2:
PF0010425=Hormone_recep=PD(32.1=67.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGAAGTGCCTCAAAGTGGGC
R:
GAGCAGGATTGGGTGGGAAAC
Band lengths:
345-873
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types