HsaEX6099093 @ hg19
Exon Skipping
Gene
ENSG00000175745 | NR2F1
Description
nuclear receptor subfamily 2, group F, member 1 [Source:HGNC Symbol;Acc:7975]
Coordinates
chr5:92922807-92930321:+
Coord C1 exon
chr5:92922807-92922949
Coord A exon
chr5:92923623-92924150
Coord C2 exon
chr5:92929268-92930321
Length
528 bp
Sequences
Splice sites
3' ss Seq
TCTCTCTTTCTTTTTGTCAGCGG
3' ss Score
7.59
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
ATTCAGATGGTTAATGAATCCAGTGTTTTTGCAGTTGAAAGCTCGTGCATTCACTGGGCAAAAGCTGGCTGCAGGTTGCAGTGGCACCGCGCAGGACAGACATTAATTATATTTCCTACTTTTTTCAATAATGTTTGGCTACT
Seq A exon
CGGTTCAGCGAGGAAGAATGCCTCCAACCCAGCCCAATCCAGGCCAGTACGCACTCACCAACGGGGACCCCCTCAACGGCCACTGCTACCTGTCCGGCTACATCTCGCTGCTGCTGCGCGCCGAGCCCTACCCCACGTCGCGCTACGGCAGCCAGTGCATGCAGCCCAACAACATTATGGGCATCGAGAACATCTGCGAGCTGGCCGCGCGCCTGCTCTTCAGCGCCGTCGAGTGGGCCCGCAACATCCCCTTCTTCCCGGATCTGCAGATCACCGACCAGGTGTCCCTGCTACGCCTCACCTGGAGCGAGCTGTTCGTGCTCAACGCGGCCCAGTGCTCTATGCCGCTGCACGTGGCGCCGTTGCTGGCCGCCGCCGGCCTGCATGCCTCGCCCATGTCTGCCGACCGCGTCGTGGCCTTCATGGACCACATCCGCATCTTCCAGGAGCAGGTGGAGAAGCTCAAGGCGCTACACGTCGACTCAGCCGAGTACAGCTGCCTCAAAGCCATCGTGCTGTTCACGTCAG
Seq C2 exon
ACGCCTGTGGCCTGTCGGATGCGGCCCACATCGAGAGCCTGCAGGAGAAGTCGCAGTGCGCACTGGAGGAGTACGTGAGGAGCCAGTACCCCAACCAGCCCAGCCGTTTTGGCAAACTGCTGCTGCGACTGCCCTCGCTGCGCACCGTGTCCTCCTCCGTCATCGAGCAGCTCTTCTTCGTCCGTTTGGTAGGTAAAACCCCCATCGAAACTCTCATCCGCGATATGTTACTGTCTGGGAGCAGCTTCAACTGGCCTTACATGTCCATCCAGTGCTCCTAGACCTTGGGCGCTTCCCACCTGCCCCGTCCCCCTAGAGACTCAGAGGACCCACCTGGGCCAAGGACTCCAAAGCCGCGGGGACACCGGGAAGTGCAGCGGGCCAGGCAGGCTGGGTGGGAGGGAGGAGGGCCGAGACAGGAGCAGCCCACCCAGCAGAAATACAATCCGAGCTACAAAGCATGGGAAAAAGAGACTCTTTTAGGATCAGATCTGTGAGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000175745-'1-5,'1-2,6-5=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.096 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
PF0010425=Hormone_recep=PU(67.3=74.6)
C2:
PF0010425=Hormone_recep=PD(32.1=67.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GCATTCACTGGGCAAAAGCTG
R:
AGCTGCTCCCAGACAGTAACA
Band lengths:
343-871
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)