DreEX0051432 @ danRer10
Exon Skipping
Gene
ENSDARG00000052695 | nr2f1a
Description
nuclear receptor subfamily 2, group F, member 1a [Source:ZFIN;Acc:ZDB-GENE-980526-115]
Coordinates
chr5:49093202-49100038:+
Coord C1 exon
chr5:49093202-49094405
Coord A exon
chr5:49095702-49096229
Coord C2 exon
chr5:49098777-49100038
Length
528 bp
Sequences
Splice sites
3' ss Seq
CCTTTCTTTCTTTTTGTCAGCGG
3' ss Score
7.63
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
CTTCCCTTTTCCCTGCTCCGATATCCGAGCGACCAGTTCGCTTGAAAGCACTTTTCGGGCCCGAGATATGGCAATGGTAGTTAGCGTCTGGCGAGATCCGCAGGAAGACGTGGCTGGAGGACCTCCGAGCGGCCCCAATCCAGCAGCTCAGCCGGCGAGGGAGCAACAGCAGGCGGCGTCAGCGGCACCACACACTCCGCAGACCCCCAGTCAGCCAGGACCTCCGTCCACACCAGGGACGGCTGGCGACAAGGGCAGCCAGAATTCTGGACAGAGTCAACAGCATATAGAATGTGTTGTTTGCGGGGACAAATCAAGCGGCAAGCACTATGGTCAATTCACCTGCGAAGGATGCAAAAGTTTCTTCAAGAGGAGTGTCCGAAGGAACTTAACATATACATGTCGTGCCAACAGGAACTGTCCTATTGACCAACACCATCGTAATCAGTGCCAATATTGTCGGCTGAAGAAGTGTTTAAAAGTGGGCATGCGGCGGGAAG
Seq A exon
CGGTTCAGCGAGGAAGAATGCCTCCAACCCAACCGAACCCGGGCCAGTATGCGCTAACGAATGGGGATCCTCTGAACGGTCATTGCTATCTCTCCGGATACATCTCGTTACTACTTCGGGCCGAGCCTTATCCTACGTCTCGCTATGGCAGCCAGTGCATGCAGCCCAATAATATTATGGGGATCGAGAACATCTGTGAGCTTGCAGCTCGTCTGCTCTTCAGTGCAGTGGAATGGGCAAGGAACATCCCTTTCTTTCCCGATCTGCAGATCACCGACCAGGTGTCATTGCTCAGACTGACATGGAGCGAGTTATTTGTGCTAAACGCGGCTCAGTGTTCCATGCCCCTACATGTGGCCCCACTGCTCGCCGCTGCCGGCCTGCACGCCTCGCCCATGTCGGCGGATCGCGTCGTGGCCTTCATGGATCACATTCGTATCTTCCAGGAGCAGGTCGAGAAGCTCAAAGCACTGCACGTCGATTCTGCTGAATACAGCTGCATTAAGGCAATAGTGCTCTTCACGTCAG
Seq C2 exon
ACGCTTGCGGCCTGTCAGATGCTGCACACATCGAGAGTCTGCAGGAGAAGTCTCAGTGCGCCCTGGAGGAGTACGTGAGGAGCCAGTACCCGAACCAGCCCAGTCGCTTTGGCAAGCTTTTACTGCGACTGCCTTCTCTCCGCACTGTCTCTTCGTCAGTAATTGAACAGCTGTTCTTCGTTCGCTTGGTAGGTAAAACTCCCATTGAAACCCTCATCAGGGATATGTTATTATCCGGGAGCAGCTTCAACTGGCCCTACATGTCCATTCAATGATCCGAATGAGCGAGTGAAACAAAAAGACTAAAGGACCAAAATTCTGCAAGCCCTTTCAAGAAGACTATATATATAGGACCTAATTTCTGACCACTTAGGAAGACACTTTTTTGTCTTCTGGGACCGAATGGAATATGAAATGTACAAAGATTAAAGAACTGGACGTACCCCCTGTAAATCCATCGTCGTCATCAAGAACACTCTCCATTTTGTAAAATACTAGTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000052695_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.469 A=0.096 C2=0.000
Domain overlap (PFAM):
C1:
PF0010513=zf-C4=WD(100=48.3)
A:
PF0010425=Hormone_recep=PU(67.3=74.6)
C2:
PF0010425=Hormone_recep=PD(32.1=68.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAAGGGCAGCCAGAATTCTG
R:
GGTACTGGCTCCTCACGTACT
Band lengths:
342-870
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]