RnoEX0060858 @ rn6
Exon Skipping
Gene
ENSRNOG00000014795 | Nr2f1
Description
nuclear receptor subfamily 2, group F, member 1 [Source:RGD Symbol;Acc:621682]
Coordinates
chr2:5569935-5579894:-
Coord C1 exon
chr2:5578959-5579894
Coord A exon
chr2:5576022-5576549
Coord C2 exon
chr2:5569935-5570967
Length
528 bp
Sequences
Splice sites
3' ss Seq
TCTCTCTTTCTTTTTATCAGCGG
3' ss Score
8.98
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
TCGGCGAGCAGCTCGGCTCCCCCCAGCGCTCCCCGGGCCCAAAGATATGGCAATGGTAGTTAGCAGCTGGCGAGATCCGCAGGACGACGTGGCCGGGGGCAACCCCGGCGGCCCCAACCCCGCAGCGCAGGCAGCCCGCGGCGGCGGCGGCGGCGAGCAACAGCAGGCGGGCTCCGGCGCGCCGCACACGCCGCAGACCCCGGGCCAGCCCGGAGCGCCCGCCACCCCCGGCACGGCGGGGGACAAGGGCCAGGGCCCGCCGGGTTCGGGCCAGAGCCAGCAGCACATCGAGTGCGTGGTGTGCGGGGACAAGTCGAGCGGCAAGCACTACGGCCAATTCACCTGCGAGGGCTGCAAAAGTTTCTTCAAGAGGAGCGTCCGCAGGAACTTAACTTACACATGCCGTGCCAACAGGAACTGTCCCATCGACCAGCACCACCGCAACCAGTGCCAATACTGCCGCCTCAAGAAGTGCCTCAAAGTGGGCATGAGGCGGGAAG
Seq A exon
CGGTTCAGCGAGGAAGAATGCCTCCAACCCAGCCCAATCCAGGCCAGTACGCACTCACAAACGGGGATCCCCTCAATGGCCACTGCTACCTGTCCGGCTACATCTCCCTGCTGCTGCGAGCAGAGCCCTACCCCACGTCGCGTTATGGCAGCCAGTGCATGCAGCCCAACAACATCATGGGCATCGAGAACATCTGCGAGTTGGCCGCCCGCCTCCTCTTCAGCGCCGTCGAGTGGGCCCGCAACATCCCGTTCTTCCCGGATCTGCAGATCACCGACCAGGTGTCCCTGCTACGCCTCACCTGGAGCGAGCTGTTCGTGCTCAACGCGGCCCAGTGCTCCATGCCCCTGCACGTGGCGCCGCTGCTGGCAGCAGCCGGCCTACACGCCTCGCCCATGTCCGCGGACCGGGTCGTGGCCTTCATGGACCACATCCGCATCTTTCAGGAACAGGTGGAGAAGCTCAAGGCGCTGCACGTCGACTCTGCCGAGTACAGCTGCCTCAAAGCCATCGTGCTGTTCACGTCAG
Seq C2 exon
ATGCTTGTGGCCTGTCGGATGCTGCACACATCGAAAGCCTGCAGGAGAAATCGCAGTGTGCACTGGAGGAATACGTGAGGAGCCAGTACCCCAACCAGCCCAGCCGCTTTGGCAAACTGCTGCTGCGATTGCCCTCTCTTCGCACAGTGTCCTCTTCTGTCATAGAGCAGCTCTTCTTCGTCCGTTTGGTAGGTAAAACCCCCATCGAAACTCTCATCCGAGACATGTTGTTGTCAGGGAGCAGTTTCAACTGGCCTTACATGTCCATCCAGTGCTCCTAGACCTTGGGTGTTTCCCACCTGCCCCTGCACCCCCTAACTCCCTAGAGACTAAGCGGACTCACCCTGACCAAGGACTCAAAAGCCTTTGGGGATGCTGGTATGATGGCAGGCCAGGCAGAGGGGAGGAGGGCTGTGGACAGGAGCGGCCCACTCTGCAGGAATGCAACCTGAGCTGCAAACCATGAGAGAAAGAGACTCATTTAGGATCTGATCTGTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000014795-'0-3,'0-2,6-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.513 A=0.079 C2=0.000
Domain overlap (PFAM):
C1:
PF0010513=zf-C4=WD(100=46.1)
A:
PF0010425=Hormone_recep=PU(67.3=74.6)
C2:
PF0010425=Hormone_recep=PD(32.1=67.0)
Main Skipping Isoform:
ENSRNOT00000020044fB9828
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGTGCCTCAAAGTGGGCAT
R:
CTAGGGAGTTAGGGGGTGCAG
Band lengths:
358-886
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]