MmuEX6059418 @ mm9
Exon Skipping
Gene
ENSMUSG00000069171 | Nr2f1
Description
nuclear receptor subfamily 2, group F, member 1 [Source:MGI Symbol;Acc:MGI:1352451]
Coordinates
chr13:78328234-78335634:-
Coord C1 exon
chr13:78335603-78335634
Coord A exon
chr13:78334423-78334950
Coord C2 exon
chr13:78328234-78329274
Length
528 bp
Sequences
Splice sites
3' ss Seq
TCTCTCTTTCTTTTTATCAGCGG
3' ss Score
8.98
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
GTTCCTACTTTTTTTCAATATGTTTGGCTACT
Seq A exon
CGGTTCAGCGAGGAAGAATGCCTCCAACCCAGCCCAATCCAGGCCAGTATGCACTCACAAACGGGGATCCTCTCAATGGCCACTGCTACCTGTCTGGCTACATTTCTCTGCTGCTGCGCGCAGAGCCCTACCCCACGTCGCGTTATGGCAGCCAGTGCATGCAGCCCAACAACATCATGGGCATCGAGAACATCTGCGAGCTGGCAGCCCGCCTCCTCTTCAGCGCCGTCGAGTGGGCCCGCAACATCCCGTTCTTCCCGGATCTGCAGATCACGGACCAGGTGTCTCTGCTGCGCCTCACCTGGAGCGAGCTGTTCGTGCTCAACGCGGCCCAGTGCTCCATGCCCCTGCACGTGGCGCCGCTGCTGGCCGCAGCCGGCCTGCACGCCTCGCCCATGTCCGCGGACCGCGTCGTGGCCTTCATGGACCACATCCGCATCTTTCAGGAACAGGTGGAGAAGCTCAAGGCGCTGCACGTCGACTCTGCCGAGTACAGCTGCCTCAAAGCCATCGTGCTATTCACGTCAG
Seq C2 exon
ATGCTTGTGGCCTGTCGGATGCTGCCCACATCGAAAGCCTGCAGGAGAAATCACAGTGTGCCCTGGAGGAGTATGTGAGAAGCCAGTACCCCAACCAGCCCAGCCGCTTTGGCAAACTGCTGCTGCGATTGCCCTCTCTTCGCACAGTGTCCTCCTCTGTCATCGAGCAACTCTTCTTCGTACGTTTGGTAGGTAAAACTCCCATCGAAACTCTCATCCGAGATATGTTGCTGTCAGGGAGCAGTTTCAACTGGCCTTACATGTCCATCCAGTGTTCCTAGACTTTGGGTGTTTCCCACCCAATCCTGCTCCCTGACTCCCTAGAGACTAAGAGGACTCTCCCTGACCAAGGACTAAAAAGCCTTTGGGGATGCTGGTATGATGGACCAGGCAGGCCAGGCAGACGGGAGGAGGGCTGGGAACAAGAGCAGCCCACTCTGCAGGAATGCAACCTGAGCTGCAAACCAGGAGAAAAGGAGACTCATTTAGGATCTGATCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000069171-'2-8,'2-5,6-8=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.076 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0010425=Hormone_recep=PU(67.3=74.6),PF034689=XS=PU(50.0=22.6)
C2:
PF0010425=Hormone_recep=PD(32.1=67.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: