BtaEX6041982 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000017599 | NR2F1
Description
Bos taurus nuclear receptor subfamily 2, group F, member 1 (NR2F1), mRNA. [Source:RefSeq mRNA;Acc:NM_175804]
Coordinates
chr7:95456536-95464057:+
Coord C1 exon
chr7:95456536-95456612
Coord A exon
chr7:95457317-95457844
Coord C2 exon
chr7:95462977-95464057
Length
528 bp
Sequences
Splice sites
3' ss Seq
TCTCTCTTTCTTTTTGTCAGCGG
3' ss Score
7.59
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
GGCTGCAGGTTGCTGTGGCACCTCACAGGACAGACATTAATTATATTTTCCACTTTTTTCAATAATGTTTGGCTACT
Seq A exon
CGGTTCAGCGAGGAAGAATGCCTCCCACTCAACCCAATCCAGGCCAGTACGCACTCACCAACGGGGACCCCCTCAACGGCCACTGCTACCTGTCCGGCTACATCTCGCTGCTGCTGCGCGCGGAGCCCTACCCCACGTCGCGTTACGGCAGCCAGTGCATGCAGCCCAACAACATCATGGGCATCGAGAACATCTGCGAGCTGGCCGCGCGCCTGCTCTTCAGCGCCGTCGAGTGGGCCCGCAACATCCCCTTCTTCCCGGATCTGCAGATCACCGACCAGGTGTCCCTGCTCCGCCTGACCTGGAGCGAGCTGTTCGTGCTCAACGCAGCCCAGTGCTCCATGCCGCTGCACGTGGCGCCGCTGCTGGCCGCCGCCGGCCTGCACGCCTCGCCCATGTCCGCCGACCGCGTCGTGGCCTTCATGGACCACATCCGCATCTTCCAGGAGCAGGTGGAGAAGCTCAAGGCGCTGCACGTCGACTCGGCCGAGTACAGCTGTCTCAAAGCCATCGTGCTGTTCACGTCAG
Seq C2 exon
ATGCCTGTGGCCTGTCGGATGCGGCCCACATCGAAAGCCTCCAAGAGAAGTCGCAGTGCGCGCTGGAGGAGTATGTGAGGAGCCAGTACCCTAACCAGCCCAGCCGCTTCGGCAAACTGCTGCTGCGGCTGCCCTCGTTGCGCACCGTGTCGTCCTCGGTCATCGAGCAACTCTTCTTCGTCCGTTTGGTAGGTAAAACCCCCATCGAAACTCTCATCCGCGACATGTTACTATCCGGGAGCAGCTTCAACTGGCCTTACATGTCCATCCAGTGCTCCTAGACCTTGGGCGCTTCCCACCTGCCCCCAGCCCCTAGAGACTCACAGCACCGGCGGGGGGCCGTGGACTCCAAAGCCGCGGAGACACCAGGCGGCCGATGCTGGGTGCGGCAGGGCCGGGCAGGCGGGGAGGAGGGCCGGGGGGGCGACAGGAGCCGCCCACCGCGCAGACAGGCAAACCGAAGCTGCAAACCTGGAGAAAAAAAAAAAGAGAGAGAGAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000017599-'2-2,'2-1,4-2=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.076 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0010425=Hormone_recep=PU(67.3=74.6)
C2:
PF0010425=Hormone_recep=PD(32.1=67.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCACCTCACAGGACAGACATT
R:
CCAAGGTCTAGGAGCACTGGA
Band lengths:
348-876
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]