DreEX6042763 @ danRer10
Exon Skipping
Gene
ENSDARG00000033172 | nr2f5
Description
nuclear receptor subfamily 2, group F, member 5 [Source:ZFIN;Acc:ZDB-GENE-990415-253]
Coordinates
chr16:46327621-46355855:+
Coord C1 exon
chr16:46327621-46328636
Coord A exon
chr16:46353826-46354106
Coord C2 exon
chr16:46355609-46355855
Length
281 bp
Sequences
Splice sites
3' ss Seq
CTTGTTTTCTCTTTTCGCAGCTG
3' ss Score
10.29
5' ss Seq
CAGGTAAAG
5' ss Score
9.65
Exon sequences
Seq C1 exon
TTTTATTTTATTACCTAGAAAGATCTCCGAAGCGGGAAGCGCCGCGCGCCTCGTCTGGATCTCTTGAACTCTCCTCCCCGCTTTAAGGAGTCGCATTGTATCGGTTGCTATCACAAAAGTGTCGCGGGATAGCATGGCAATGGTAGTAAATCAGTGGCAAGAAAACATTTCGGCTGATCCCGGCTCCCAGCTGCAAATGTGCAGTCAGGAGCCTGGCGGGACACCGGGAACTCCCTCTGGGTCAACCCCGGGCAACGATGCGCTCTCCGGAGACAAAATTCCCAATGTGGACTGCATGGTGTGCGGGGACAAATCCAGCGGTAAACACTACGGCCAGTTTACCTGCGAGGGCTGCAAGAGCTTCTTCAAGCGCTCGGTGAGACGGAACCTGAGTTACACCTGCCGGGGAAACCGGGACTGTCCCATTGACCAGCACCATCGGAACCAGTGCCAATACTGCCGGCTCAAGAAGTGCTTGAAAGTCGGAATGAGAAGAGAGG
Seq A exon
CTGTCCAGAGGGGTCGAATGTCCAACTCTCAGTCAAGTCCAGGACAGTACCTGAGCAATGGAAGTGACCCGTATAATGGTCAGCCGTACCTGTCCGGCTTCATCTCTCTGCTCTTACGGGCTGAACCGTACCCCACGTCCCGCTATGGAGCCCAATGTATGCAGTCGAATAACCTGATGGGCATCGAGAACATATGCGAACTGGCTGCACGTCTGCTGTTCAGCGCTGTGGAGTGGGCCAAAAATATACCTTTCTTTCCAGACCTGCAGCTTATGGATCAG
Seq C2 exon
GTGGCGCTGTTACGCATGTCGTGGAGTGAGCTGTTTGTTCTAAATGCTGCTCAGTGCTCAATGCCTCTGCATGTAGCGCCCCTGCTGGCCGCCGCTGGACTACACGCGTCCCCCATGTCTGCCGAGCGTGTGGTGGCCTTCATGGACCATATACGAGTCTTTCAGGAGCAGGTGGAGAAACTGAAAGCCCTTCAGGTGGACACGGCCGAGTACTCCTGCCTGAAGTCTATCGTACTCTTCACCTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000033172-'0-2,'0-1,3-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.264 A=0.181 C2=0.000
Domain overlap (PFAM):
C1:
PF0010513=zf-C4=WD(100=56.9)
A:
PF0010425=Hormone_recep=PU(24.6=51.1)
C2:
PF0010425=Hormone_recep=FE(42.1=100)
Main Skipping Isoform:
ENSDART00000040769fB4321
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTGACCAGCACCATCGGAAC
R:
ACTTCAGGCAGGAGTACTCGG
Band lengths:
302-583
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]