DreEX6027007 @ danRer10
Exon Skipping
Gene
ENSDARG00000003607 | nr2f6a
Description
nuclear receptor subfamily 2, group F, member 6a [Source:ZFIN;Acc:ZDB-GENE-030131-4362]
Coordinates
chr2:24721041-24730731:+
Coord C1 exon
chr2:24721041-24721135
Coord A exon
chr2:24725994-24726563
Coord C2 exon
chr2:24729205-24730731
Length
570 bp
Sequences
Splice sites
3' ss Seq
CCTCTTCTTCTCCCCTTTAGCAG
3' ss Score
8.81
5' ss Seq
CAGGTAAAC
5' ss Score
7.82
Exon sequences
Seq C1 exon
ATCAAACCGAGACTGCCAAATTGACCAGCATCATCGCAACCAGTGTCAATACTGCCGTTTAAAGAAGTGTTTCCGAGTGGGAATGCGTAAAGAAG
Seq A exon
CAGTTCAGCGTGGACGGATCCCACCTTCACATTCGAGCCTGAGCCCATCTACAACTCCAGTAGGCGGTAATGCCGGCGGTGGTGTGAGCGAGTTCTACAATGGGCAGCCGGTGTCCGAGCTCATCTCCCAGCTCCTGCGGGCAGAGCCTTACCCTAACAGCCGCTACAGCCACCAGTACAACCAGCAGATGCAAGGCGGTGGTGGCGGTGGATCTGGCATGGGCATCGACAGCATCTGTGAGCTCGCTGCCAGACTCCTGTTTAGCATCATCGAATGGGCCCGAAACATTCCGTACTTCCCCGAATTGCCAGTATCGGAGCAGGTGGCCTTGCTGCGGCTCAGCTGGAGCGAACTGTTTATTCTGAACGCAGCTCAATCTGCCCTGCCACTGCACATGGCCCCGCTGCTGGCCGCCGCAGGCTTCCACTCCTCACCCATGTCCGCGGAAAGGGTGGTGTCCTTCATGGACCAGGTGCGCGTCTTCCAGGACCAGGTGGAGAAGCTGACGCGTCTGCAGGTGGATTCGGCAGAGTACAGCTGTCTCAAGGCCATAGCGCTCTTCTCGCCAG
Seq C2 exon
ATGCGTGTGGGCTGACAGATCCCGCTCATGTAGAAAGCCTGCAGGAGAAAGCTCAGGTGGCTCTTACCGAGTACGAGCGCATGCAGTACCCCGGGCAGCCCCAGCGTTTCGGACGGCTCCTGCTGCGACTGCCCGCTCTGAGGGCCGTGCCCGCCAGCCTCATCTCTCAGCTCTTCTTCATGCGGCTCGTGGGCAAAACGCCCATCGAGACACTCATCCGTGACATGCAGCTGTCTGGCAGCTCCATCAGTTGGCCGTATGCTCCTGGACAATAATCTTCATCACATGTGACCAGCCTGAACGGGAAGATCTTGGTCTGACTTGTTTTGTTTTTTTATATCCACACATTTACATCTGATATTCAGTGTATTGCCTAATGCAACAGGGTCGCACTATGGAAATGGTGAATTGGGTATTATGTTGCAGATCGGTGAACTTCAACATGACTTGAAGTATTTGTTATCTGCCAACCAAAGGTAAGACGTGAGGTACCATTTTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000003607-'6-9,'6-6,9-9=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.168 C2=0.000
Domain overlap (PFAM):
C1:
PF0010513=zf-C4=PD(42.9=90.9)
A:
PF0010425=Hormone_recep=PU(65.0=62.3)
C2:
PF0010425=Hormone_recep=PD(34.4=68.5)
Main Skipping Isoform:
ENSDART00000022379fB4322
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCGAGACTGCCAAATTGACC
R:
GGAGCATACGGCCAACTGATG
Band lengths:
355-925
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]