BtaEX6037106 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000009331 | CPAMD8
Description
C3 and PZP-like, alpha-2-macroglobulin domain containing 8 [Source:HGNC Symbol;Acc:HGNC:23228]
Coordinates
chr7:6014891-6018933:+
Coord C1 exon
chr7:6014891-6014975
Coord A exon
chr7:6016032-6016140
Coord C2 exon
chr7:6018706-6018933
Length
109 bp
Sequences
Splice sites
3' ss Seq
TCTTTGTCCTTTCGTTCCAGGTA
3' ss Score
12.14
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
Exon sequences
Seq C1 exon
TGCTGCCGAAGTTTGAGCTCCTTATTGACCCACCCGCTTATATCCGGGACCTGGACACATGTGAAACCGGCACTGTGCAAGCCAG
Seq A exon
GTATACCTTTGGGAAACCCGTCTCGGGAACTTTAACCATCAACATGACTGTGAATGGTGTGGGGTACTACAGCCAGGAGGTGGGGCGCCCCATCCTTAGGACCACCAAG
Seq C2 exon
ATCCATGGCTCCCAGGACTTCAGCATCTGTGTGAAGGACATGATTCCGGCCGACGTCCCCGAGCACTTCCGGGGCACCATCAGCATCTGGGCCACGGTGACCGCTGTGGACGGGAGCCATCAGGTGGCCTTCGACGACTCCACTCCGGTCCAGAGGCAGCTGGTGGACGTCCGGTACTCCAAGGACACGAGGAAGCAGTTTAAGCCGGGGCTGTCCTACGTGGGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000009331-'9-12,'9-11,10-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.013
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCTTATATCCGGGACCTGGA
R:
CGGCTTAAACTGCTTCCTCGT
Band lengths:
258-367
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]