GgaEX0004950 @ galGal4
Exon Skipping
Gene
ENSGALG00000003742 | CPAMD8
Description
C3 and PZP-like, alpha-2-macroglobulin domain containing 8 [Source:HGNC Symbol;Acc:HGNC:23228]
Coordinates
chr28:3983663-3984837:+
Coord C1 exon
chr28:3983663-3983747
Coord A exon
chr28:3984030-3984138
Coord C2 exon
chr28:3984610-3984837
Length
109 bp
Sequences
Splice sites
3' ss Seq
TTATCTTCTTTCCATTTCAGATA
3' ss Score
12.58
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
TATTACCAAAATTTGAGCTGCTGATTGACCCACCTCGCTACATTCGTGACCTTACAGCGTGTGAAAAAGGAACTGTCCACGCCAG
Seq A exon
ATATACATTTGGAAAACCAGTGACAGGAAAGTTAATTGTCAATATGACTATAAATGGTGTAGGGTATTACAGGCATGAAGTGGGACACCCTGTCCTCAAGACCACCCAG
Seq C2 exon
ATTGATGGCTCTGCTGTTTTCGATGTGTGTGTGAAAGAAATGATGCCTGCTGATGTCCCGGAGCATTTTCGAGGCACAGTCAATATCTGGGCCACGGTGGTCAGCTCTGATGGGAGCAAACAGGTCACATTCGACGACTCAACGCCTGTTCAGAAACAGCTGATTGACATCAAGTACTCCAAGGACACCAGGAAACAATTCAAACCCGGACTGCCCTACAAAGGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003742_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF084285=Rib=PU(47.6=26.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTGACCTTACAGCGTGTGAA
R:
GGCAGTCCGGGTTTGAATTGT
Band lengths:
256-365
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]