DreEX6098963 @ danRer10
Exon Skipping
Gene
ENSDARG00000056530 | CPAMD8
Description
C3 and PZP-like, alpha-2-macroglobulin domain containing 8 [Source:HGNC Symbol;Acc:HGNC:23228]
Coordinates
chr22:21236582-21237567:+
Coord C1 exon
chr22:21236582-21236666
Coord A exon
chr22:21236742-21236850
Coord C2 exon
chr22:21237340-21237567
Length
109 bp
Sequences
Splice sites
3' ss Seq
TTTACCCTGCATTTTTCCAGGTA
3' ss Score
9.52
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
Exon sequences
Seq C1 exon
TTATGCCCAGGTTTGAGCTCATCATTGTACCACCTCCATATATTCGAGATCTCAATTCTTGTGAACAGGTCACAGTCAAAGCAAG
Seq A exon
GTACACCTTTGGAAAACCAGTGTCAGGCAAATTAACGGTTAATATGACTGTTAATGGAGTAGGCTACTACAGACATGAAGTAGGCCACCCAGTGGTGAAATCAATGGAG
Seq C2 exon
ATCAAAGGCTCCGCTTCTTTCAGCCTCTGTGTGAAGGACATGATGCCAATAGAAGTTACAGATCATTTCCGAGGTGCAGTGAACATGTGGGTCACAGTAAACAGTGTGGATGGGGGGCAACAGACCATGTTTGATGATTCAACACCTGTCCACAAGCAGCTCATTGACATCAAGTACTCCAAAGATACTCGCAAACAGTTCAAACCTGGTCTTCCCTACAAGGGCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000056530-'8-13,'8-12,9-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.039
Domain overlap (PFAM):
C1:
PF077039=A2M_N_2=PD(5.1=34.5)
A:
NO
C2:
PF084285=Rib=PU(45.0=23.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCCAGGTTTGAGCTCATCAT
R:
AATGAGCTGCTTGTGGACAGG
Band lengths:
246-355
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]