GgaEX0004950 @ galGal3
Exon Skipping
Gene
ENSGALG00000003742 | CPAMD8
Description
NA
Coordinates
chr28:3774127-3775301:+
Coord C1 exon
chr28:3774127-3774211
Coord A exon
chr28:3774494-3774602
Coord C2 exon
chr28:3775074-3775301
Length
109 bp
Sequences
Splice sites
3' ss Seq
TTATCTTCTTTCCATTTCAGATA
3' ss Score
12.58
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
TATTACCAAAATTTGAGCTGCTGATTGACCCACCTCGCTACATTCGTGACCTTACAGCGTGTGAAAAAGGAACTGTCCACGCCAG
Seq A exon
ATATACATTTGGAAAACCAGTGACAGGAAAGTTAATTGTCAATATGACTATAAATGGTGTAGGGTATTACAGGCATGAAGTGGGACACCCTGTCCTCAAGACCACCCAG
Seq C2 exon
ATTGATGGCTCTGCTGTTTTCGATGTGTGTGTGAAAGAAATGATGCCTGCTGATGTCCCGGAGCATTTTCGAGGCACAGTCAATATCTGGGCCACGGTGGTCAGCTCTGATGGGAGCAAACAGGTCACATTCGACGACTCAACGCCTGTTCAGAAACAGCTGATTGACATCAAGTACTCCAAGGACACCAGGAAACAATTCAAACCCGGACTGCCCTACAAAGGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003742_CASSETTE2
Average complexity
S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF084285=Rib=PU(47.6=26.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTGACCTTACAGCGTGTGAA
R:
GGCAGTCCGGGTTTGAATTGT
Band lengths:
256-365
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]