BtaEX6037232 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000047933 | CYP4F22
Description
cytochrome P450, family 4, subfamily F, polypeptide 22 [Source:HGNC Symbol;Acc:HGNC:26820]
Coordinates
chr7:8629102-8631383:-
Coord C1 exon
chr7:8631319-8631383
Coord A exon
chr7:8629858-8629940
Coord C2 exon
chr7:8629102-8629279
Length
83 bp
Sequences
Splice sites
3' ss Seq
CACAATCTACTTCTGCCTAGGTG
3' ss Score
6.54
5' ss Seq
CAGGTAACT
5' ss Score
8.63
Exon sequences
Seq C1 exon
GAATCATCTGCCTGGTTAGCATCTATGGGACCCACTATAACCCTGCAGTGTGGCCTGACTCCAAG
Seq A exon
GTGTACAACCCCTATCGCTTTGATCCGGACAACCCACAGCAGCGCTCCCCATTGGCTTACGTGCCCTTTTCTGCAGGACCCAG
Seq C2 exon
GAACTGCATCGGACAGAGCTTCGCCATGGCTGAGATGCGCGTGGCTGTGGCGCTGACGCTACTGCGTTTCCGCCTGAGCGTGGACCGAACACGCAAGGTGCGGCGGAAGCCCGAGCTCATTCTGCGCACGGAGAACGGCATCTGGCTCAAGGTGGAGCCGCTGCCTCCGCGGGCCTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000047933-'9-10,'9-9,10-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.107 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(4.5=100)
A:
PF0006717=p450=FE(5.8=100)
C2:
PF0006717=p450=PD(11.0=85.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TATAACCCTGCAGTGTGGCCT
R:
CTTGAGCCAGATGCCGTTCTC
Band lengths:
181-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]