HsaEX6093615 @ hg19
Exon Skipping
Gene
ENSG00000171954 | CYP4F22
Description
cytochrome P450, family 4, subfamily F, polypeptide 22 [Source:HGNC Symbol;Acc:26820]
Coordinates
chr19:15659949-15663127:+
Coord C1 exon
chr19:15659949-15660013
Coord A exon
chr19:15661485-15661567
Coord C2 exon
chr19:15662105-15663127
Length
83 bp
Sequences
Splice sites
3' ss Seq
TCCAGGCTGTTCCTCCCTAGGTG
3' ss Score
9.29
5' ss Seq
CAGGTAACC
5' ss Score
8.66
Exon sequences
Seq C1 exon
GAATCATCTGCTTGGTCAGCATCTATGGAACCCACCACAACCCCACAGTGTGGCCTGACTCCAAG
Seq A exon
GTGTACAACCCCTACCGCTTTGACCCGGACAACCCACAGCAGCGCTCTCCACTGGCCTATGTGCCCTTCTCTGCAGGACCCAG
Seq C2 exon
GAATTGCATCGGACAGAGCTTCGCCATGGCCGAGTTGCGCGTGGTTGTGGCACTAACACTGCTACGTTTCCGCCTGAGCGTGGACCGAACGCGCAAGGTGCGGCGGAAGCCGGAGCTCATACTGCGCACGGAGAACGGGCTCTGGCTCAAGGTGGAGCCGCTGCCTCCGCGGGCCTGAGCGTGGGCGCGCCCCTGCGGCTCCCGAGGGTCCAGGCCCCGCCCCCAAAGGACCAGGACTCGCCCCAAAGATCCCGAGGGCATAGGCCACCCCCCTCGAAGTTCAGGTTCAGCTCCTGGATGACCAGGCACCGCTGTTGAGCAGCCTGGTGGTACTGGCCACGCCCCTCAAGGCAAGGCTCCTCCCCTTAGGGGGCCTGATCCCGCCCCTTGAGGCTTAGGTCCCGCCCCCTGACTTCTCGCACCTGTCCTGTTTGAGGGACCAGGGTCGACCCTGCCCCCTTGGGCTCAGGCCCCGCCCCCAGGATCCTACGGATTGAGGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000171954-'9-10,'9-9,10-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.143 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(4.5=100)
A:
PF0006717=p450=FE(5.8=100)
C2:
PF0006717=p450=PD(11.0=85.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTATGGAACCCACCACAACCC
R:
GTTCTCCGTGCGCAGTATGAG
Band lengths:
179-262
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)