RnoEX0026005 @ rn6
Exon Skipping
Gene
ENSRNOG00000029478 | Cyp4f39
Description
cytochrome P450, family 4, subfamily f, polypeptide 39 [Source:RGD Symbol;Acc:1308796]
Coordinates
chr7:14512772-14514974:+
Coord C1 exon
chr7:14512772-14512836
Coord A exon
chr7:14513386-14513468
Coord C2 exon
chr7:14513884-14514974
Length
83 bp
Sequences
Splice sites
3' ss Seq
CCCAGGCAATTCTTGTCTAGGTA
3' ss Score
5.17
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
Exon sequences
Seq C1 exon
GAATTATCTGCTTGGTCAGCATCTACGGGACCCACTACAACCCCTTAGTGTGGCCTGACTCTAAG
Seq A exon
GTATACAATCCCTACCGTTTTGACCCAGACATTCCACAGCAGCGCTCCCCGCTGGCCTTTGTGCCTTTCTCAGCAGGTCCCAG
Seq C2 exon
GAACTGCATCGGGCAGAGCTTCGCCATGGCAGAGATGCGAGTGGTCGTGGCGCTGACACTCCTGCGCTTCCGCCTGAGCGTGGACCGAACCCGCAAGGTGCGGAGGAAGCCGGAGCTTATTCTACGCACGGAGAACGGCCTTTGGCTCAACGTGGAGCCGCTACCCTCGCGGGCCGGAGTGCCCCGAGGCCCCACGGAACCTGAGGTTCAGGCTCCGCCCGCTCAGGCCTAGACCACGCCTCCAAAGGCCTGGATCCGCCCCCAAGATATTGAGGACGTTGACTACGCTCCTCGAAAGCACAGGAGGACCAAGCTTTGTAGAGGAGCAGCTTGTTGGTGCTGACTTCGCCCCTCAGGACAAGACCCCATCCTTGGGATTTGGGTCAAAGTTCTGTCTTGAATTACTCCCACCGGCCCTCAGCGTGTGGGGATCATGCTAGGCCCCGCCCCCTCGGGCATGGGCTGCGGGCCCCAGTTTAAATCAGATTACCCTGGCCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000029478-'14-17,'14-16,15-17
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.036 C2=0.247
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(4.5=100)
A:
PF0006717=p450=FE(5.8=100)
C2:
PF0006717=p450=PD(10.9=65.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCATCTACGGGACCCACTA
R:
CGTGCGTAGAATAAGCTCCGG
Band lengths:
179-262
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]