MmuEX6076807 @ mm10
Exon Skipping
Gene
ENSMUSG00000061126 | Cyp4f39
Description
cytochrome P450, family 4, subfamily f, polypeptide 39 [Source:MGI Symbol;Acc:MGI:2445210]
Coordinates
chr17:32491143-32492479:+
Coord C1 exon
chr17:32491143-32491207
Coord A exon
chr17:32491807-32491889
Coord C2 exon
chr17:32492302-32492479
Length
83 bp
Sequences
Splice sites
3' ss Seq
ACCCAGGCAATCTTGTCTAGGTA
3' ss Score
3.35
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
Exon sequences
Seq C1 exon
GAATTATCTGCTTGGTCAGCATCTACGGGACCCACCACAACCCCATAGTGTGGCCTGACTCTAAG
Seq A exon
GTATACAATCCTTACCGTTTTGACCCGGACACCCCACAGCAGCGCTCTCCACTGGCCTTTGTACCTTTCTCAGCAGGTCCCAG
Seq C2 exon
GAATTGCATCGGGCAGAGCTTCGCCATGGCAGAGATGCGTGTAGTCGTGGCGCTGACACTGCTGCGCTTCCGCCTGAGCGTGGACCGAACCCACAAGGTGCGGAGGAAGCCGGAGCTTATTCTACGCACGGAGAACGGCCTTTGGCTCAATGTAGAGCCTCTACCCTCACGGGCCTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000061126-'14-12,'14-11,15-12
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.107 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(4.5=100)
A:
PF0006717=p450=FE(5.8=100)
C2:
PF0006717=p450=PD(10.9=85.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACCCACCACAACCCCATAGT
R:
CGTGCGTAGAATAAGCTCCGG
Band lengths:
167-250
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types