BtaEX6037304 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000043971 | NOTCH3
Description
notch 3 [Source:HGNC Symbol;Acc:HGNC:7883]
Coordinates
chr7:8943246-8944841:+
Coord C1 exon
chr7:8943246-8943397
Coord A exon
chr7:8943621-8943734
Coord C2 exon
chr7:8944686-8944841
Length
114 bp
Sequences
Splice sites
3' ss Seq
ACTCTGCCTGCCCACTACAGGCC
3' ss Score
8
5' ss Seq
AAGGTACAC
5' ss Score
7.56
Exon sequences
Seq C1 exon
GTTCCGCTGTGTGTGTGAGCCTGGCTGGAGTGGCCCTCAGTGCAGTCAGAGCCTCACTCGAGATGCCTGTGAATCCCATCCCTGCCGGGCAGGCGGCACCTGCACCAGTGATGGAATGGGCTTCCGCTGCACCTGTCCCCCTGGTGTCCAGG
Seq A exon
GCCATCAGTGTGAGCTGCTGTCCCCCTGCACCCCGAATCCCTGTGAGCATGGGGGCTACTGTGAGTCTGCTCCTGGCCAGATGGCTGTCTGCTCCTGCACCCCTGGTTGGCAAG
Seq C2 exon
GCCCACGATGTCAGCAGGATGTGGATGAGTGTGCCAGCCCCTCACCCTGTGGTCCCCATGGTACCTGCACCAACCTGGCAGGGAGTTTCAGCTGTACCTGCCACGAGGGCTACAGTGGCCCTTCCTGTGATCAGGACATCGATGACTGTGACCCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000043971-'17-16,'17-15,18-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0000822=EGF=PD(43.3=25.0),PF0000822=EGF=PU(90.3=53.8)
A:
PF0000822=EGF=PD(6.5=5.1),PF0000822=EGF=PU(90.6=74.4)
C2:
PF0000822=EGF=PD(6.2=3.8),PF0764510=EGF_CA=WD(100=73.6),PF0000822=EGF=PU(9.7=5.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGCCTGTGAATCCCATCCC
R:
TGGGGTCACAGTCATCGATGT
Band lengths:
247-361
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]