MmuEX0032052 @ mm9
Exon Skipping
Gene
ENSMUSG00000038146 | Notch3
Description
Notch gene homolog 3 (Drosophila) [Source:MGI Symbol;Acc:MGI:99460]
Coordinates
chr17:32286920-32288382:-
Coord C1 exon
chr17:32288231-32288382
Coord A exon
chr17:32287548-32287661
Coord C2 exon
chr17:32286920-32287075
Length
114 bp
Sequences
Splice sites
3' ss Seq
AAACTATCTGCTTCTAACAGGCC
3' ss Score
7.26
5' ss Seq
AAGGTACAC
5' ss Score
7.56
Exon sequences
Seq C1 exon
GTTCCGCTGTGTTTGTGAGCCCGGGTGGAGTGGCCCTCGCTGTAGCCAGAGCCTGGCTCCAGATGCCTGTGAGTCCCAGCCCTGCCAGGCTGGTGGCACCTGCACCAGTGATGGAATAGGCTTTCGCTGCACCTGTGCCCCTGGATTCCAGG
Seq A exon
GCCATCAGTGTGAGGTGCTGTCCCCCTGTACTCCAAGCCTCTGTGAGCACGGAGGCCACTGTGAGTCTGACCCTGACCGGCTGACTGTCTGTTCCTGTCCCCCAGGCTGGCAAG
Seq C2 exon
GCCCACGATGCCAGCAGGATGTGGATGAATGTGCCGGTGCCTCACCCTGCGGCCCCCATGGTACCTGCACCAACCTGCCAGGGAATTTCAGGTGCATCTGCCACAGGGGATACACTGGCCCCTTCTGTGATCAAGACATTGACGACTGTGACCCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038146-'16-20,'16-19,17-20
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0000822=EGF=PD(43.3=25.0),PF0000822=EGF=PU(90.3=53.8)
A:
PF0000822=EGF=PD(6.5=5.1),PF0000822=EGF=PU(90.6=74.4)
C2:
PF0000822=EGF=PD(6.2=3.8),PF0764510=EGF_CA=WD(100=73.6),PF0000822=EGF=PU(9.7=5.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCAGATGCCTGTGAGTCCC
R:
GGGGTCACAGTCGTCAATGTC
Band lengths:
251-365
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: