BtaEX6037373 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000017037 | PKN1
Description
Bos taurus protein kinase N1 (PKN1), mRNA. [Source:RefSeq mRNA;Acc:NM_001080246]
Coordinates
chr7:12408481-12412755:-
Coord C1 exon
chr7:12412646-12412755
Coord A exon
chr7:12412414-12412557
Coord C2 exon
chr7:12408481-12408556
Length
144 bp
Sequences
Splice sites
3' ss Seq
CAGCCCTCTTCTTCCCTGAGGCA
3' ss Score
-2.25
5' ss Seq
GAGGTACAT
5' ss Score
6.75
Exon sequences
Seq C1 exon
ATGAGGTGAGCACTGTTCTCAAGCTGGATAACACAGTGGTGGGACAGACATCCTGGAAGCCGTGTGGCCCCAACGCCTGGGACCAGAGCTTTACCCTGGAACTGGAGAGG
Seq A exon
GCACGGGAATTGGAGTTGGCTGTGTTCTGGCGGGACCAGCGGGGCCTGTGTGCCCTCAAATTCCTGAAGTTGGAGGATTTCTTGGACAACGAGAGGCATGAGGTGCAGCTGGACATGGAACCTCAGGGCTGCCTGGTGGCTGAG
Seq C2 exon
GTCACCTTCCGCAACCCTGTCATTGAGAGGATCCCCCGGCTCCGACGACAGAAGAAGATCTTCTCCAAGCAGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000017037-'12-17,'12-15,14-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.054 A=0.010 C2=0.038
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGAGGTGAGCACTGTTCTCA
R:
CTTGCTGCTTGGAGAAGATCT
Band lengths:
186-330
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]