MmuEX6036725 @ mm10
Exon Skipping
Gene
ENSMUSG00000057672 | Pkn1
Description
protein kinase N1 [Source:MGI Symbol;Acc:MGI:108022]
Coordinates
chr8:83677931-83681289:-
Coord C1 exon
chr8:83681180-83681289
Coord A exon
chr8:83680954-83681097
Coord C2 exon
chr8:83677931-83678006
Length
144 bp
Sequences
Splice sites
3' ss Seq
TGGCCCTGTTTCTTCTTAAGGCT
3' ss Score
7.84
5' ss Seq
GAGGTACAG
5' ss Score
6.62
Exon sequences
Seq C1 exon
CTGAGGTCAGCACCGTGCTCAAGCTGGACAACACAGTGGTGGGGCAAACAGCCTGGAAGCCATGCGGCCCCAATGCCTGGGACCAGAGCTTTACCCTGGAGCTGGAGAGG
Seq A exon
GCTCGGGAGCTGGAGCTGGCTGTGTTCTGGCGAGACCAGAGGGGTCTGTGTGCTCTCAAATTTCTGAAGTTGGAGGACTTCTTGGACAACGAGAGGCATGAGGTGCAGCTGGACATGGAACCCCAGGGCTGCCTGGTGGCTGAG
Seq C2 exon
GTCACTTTCCGAAACCCCATCATCGAGCGGATCCCTAGGCTCCAAAGGCAGAAAAAAATCTTCTCCAAGCAGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000057672-'30-37,'30-34,31-37=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTCAAGCTGGACAACACAG
R:
CTTGCTGCTTGGAGAAGATTTT
Band lengths:
171-315
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types