RnoEX6059926 @ rn6
Exon Skipping
Gene
ENSRNOG00000004131 | Pkn1
Description
protein kinase N1 [Source:RGD Symbol;Acc:69308]
Coordinates
chr19:24811101-24814420:-
Coord C1 exon
chr19:24814311-24814420
Coord A exon
chr19:24814082-24814225
Coord C2 exon
chr19:24811101-24811176
Length
144 bp
Sequences
Splice sites
3' ss Seq
GATGACCGTTTTTCCTCAAGGCT
3' ss Score
6.37
5' ss Seq
GAGGTATGG
5' ss Score
8.98
Exon sequences
Seq C1 exon
CTGAGGTCAGCACCGTGCTCAAGCTGGACAACACTGTGGTGGGGCAAACAGCCTGGAAGCCATGCGGCCCCAATGCCTGGGACCAGAGCTTCACCCTGGAGCTGGAGAGG
Seq A exon
GCTCGGGAGCTGGAGTTGGCTGTGTTCTGGCGTGACCAGAGGGGTCTGTGTGCTCTCAAATTTCTGAAGTTGGAAGACTTCTTGGACAATGAGAGGCATGAGGTGCAGCTGGACATGGAACCCCAGGGCTGCCTGGTGGCTGAG
Seq C2 exon
GTCACCTTCCGTAACCCCATCATCGAGCGGATCCCTAGGCTCCAAAGGCAGAAAAAAATTTTCTCCAAGCAGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004131-'15-18,'15-16,16-18=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.054 A=0.042 C2=0.077
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTCAAGCTGGACAACACTG
R:
CTTGCTGCTTGGAGAAAATTTTT
Band lengths:
171-315
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]