BtaEX6038041 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000040076 | ILF3
Description
interleukin enhancer binding factor 3, 90kDa [Source:HGNC Symbol;Acc:HGNC:6038]
Coordinates
chr7:16384261-16385251:+
Coord C1 exon
chr7:16384261-16384428
Coord A exon
chr7:16384843-16384968
Coord C2 exon
chr7:16385075-16385251
Length
126 bp
Sequences
Splice sites
3' ss Seq
TCCCTGAGAACGTAAAACAGCAG
3' ss Score
-3.32
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
Exon sequences
Seq C1 exon
GTGTTACAGGACATGGGCTTGCCCACGGGTGCTGAAGGCAGAGACTCCAGCAAGGGGGAGGACTCCGCTGAGGAGACAGAGGCAAAGCCTGCCGTGGTGGCCCCTCCACCTGTGGTGGAAACCGTCTCGACGCCCAGTGCTGCCTTCCCCTCTGATCCCACCACCGAG
Seq A exon
CAGGGGCCGATCCTGACCAAGCATGGCAAGAACCCTGTTATGGAACTTAACGAGAAGAGGCGTGGCCTCAAGTACGAACTCATCTCAGAGACAGGGGGCAGCCACGACAAACGCTTCGTCATGGAG
Seq C2 exon
GTCGAGGTGGACGGCCAGAAGTTTCAGGGTGCTGGCTCAAACAAAAAGGTGGCCAAAGCATATGCCGCCCTGGCTGCACTAGAAAAGCTGTTCCCTGATGCCCCTCTCTCCCTGGAGGCCAACAAGAAGAAGAGAGCCCCTGTGCCTGTGAGAGGTGGCCCAAAATTTGCTGCTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000040076-'13-19,'13-17,14-19=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.905 C2=0.661
Domain overlap (PFAM):
C1:
PF0003520=dsrm=PD(6.2=7.1)
A:
PF0003520=dsrm=PU(50.8=76.2)
C2:
PF0003520=dsrm=PD(46.0=49.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTTACAGGACATGGGCTTGC
R:
AGCTTTTCTAGTGCAGCCAGG
Band lengths:
256-382
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]