DreEX0039202 @ danRer10
Exon Skipping
Gene
ENSDARG00000105177 | ilf3b
Description
interleukin enhancer binding factor 3b [Source:ZFIN;Acc:ZDB-GENE-030131-587]
Coordinates
chr3:13710962-13714054:+
Coord C1 exon
chr3:13710962-13711114
Coord A exon
chr3:13712907-13713044
Coord C2 exon
chr3:13713911-13714054
Length
138 bp
Sequences
Splice sites
3' ss Seq
GGTATTTTCTGCTCTCTCAGAAT
3' ss Score
6.08
5' ss Seq
GAGGTGAAG
5' ss Score
4.41
Exon sequences
Seq C1 exon
GTCTTGCAAGACATGGGTCTGCCCACAGGAATGGACCAGAAGACCACTGAACTGATGAAGGTGGACGAGCCGGTGAGCACACAGGAGACTTTGCCCCCAGTCATCAAAATGGAGCCAGAACCTGTACCAATTACAGAAACCCCAACTGACGAG
Seq A exon
AATGCTCGACAGCAGGGACCCATCCTGACCAAACATGGCAAGAACCCAGTGATGGAGCTCAATGAGAAACGCAGAGGGCTGAAGTATGAGCTCATCTCTGAGACCGGGGGAAGCCACGACAAACGCTTCGTCATGGAG
Seq C2 exon
GTTGAGATCGATGGACAGAAGTTTCAGGGTACTGGATCCAACAAAAAGGTGGCGAAGGCGTACGCAGCCCTGGCGGCTCTGGAGAAACTGTTCCCAGAAGGCTCCAACTCTGAGGTGAACAAGAAAAAGAAAATGCCTCCAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000105177-'17-28,'17-25,18-28
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.957 A=0.906 C2=0.650
Domain overlap (PFAM):
C1:
PF0003520=dsrm=PD(6.2=44.4)
A:
PF0003520=dsrm=PU(50.8=69.6)
C2:
PF0003520=dsrm=PD(46.0=60.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCACAGGAATGGACCAGAAG
R:
AGAGTTGGAGCCTTCTGGGAA
Band lengths:
243-381
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]