RnoEX0043979 @ rn6
Exon Skipping
Gene
ENSRNOG00000022741 | Ilf3
Description
interleukin enhancer binding factor 3 [Source:RGD Symbol;Acc:619734]
Coordinates
chr8:22433567-22435190:+
Coord C1 exon
chr8:22433567-22433734
Coord A exon
chr8:22434730-22434855
Coord C2 exon
chr8:22435014-22435190
Length
126 bp
Sequences
Splice sites
3' ss Seq
TCCCTGAGGGTGTCAAACAGCAG
3' ss Score
0.3
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
Exon sequences
Seq C1 exon
GTGTTACAGGACATGGGATTGCCAACAGGCGCTGAAGGCAGAGACTCCAGCAAGGGGGAGGACTCTGCTGAGGAGTCAGATGGGAAGCCAGCAGTAGTGGCCCCACCCCCTGTGGTGGAAGCAGTCTCCAACCCCAGTTCTGTCTTCCCTTCAGATGCCACTACTGAG
Seq A exon
CAGGGGCCGATTTTGACTAAGCACGGCAAGAATCCTGTAATGGAGCTTAATGAGAAGAGACGTGGCCTCAAATATGAGCTCATTTCTGAGACAGGGGGCAGCCACGACAAACGGTTTGTTATGGAG
Seq C2 exon
GTTGAGGTGGACGGACAGAAGTTTCAAGGTGCTGGCTCAAACAAAAAGGTAGCAAAGGCTTATGCTGCACTTGCCGCATTAGAGAAGCTTTTCCCTGACGCCCCTCTTGCTCTTGAAGCCAACAAGAAGAAAAGAGCCCCTGTGCCTGTCCGAGGCGGACCCAAATTTGCTGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000022741_MULTIEX3-2/2=1-C2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.964 A=0.857 C2=0.624
Domain overlap (PFAM):
C1:
PF0003520=dsrm=PD(6.2=7.1)
A:
PF0003520=dsrm=PU(50.8=76.2)
C2:
PF0003520=dsrm=PD(46.0=49.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGGACATGGGATTGCCAAC
R:
TCTCTAATGCGGCAAGTGCAG
Band lengths:
248-374
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]