HsaEX6092910 @ hg38
Exon Skipping
Gene
ENSG00000129351 | ILF3
Description
interleukin enhancer binding factor 3 [Source:HGNC Symbol;Acc:HGNC:6038]
Coordinates
chr19:10682537-10683542:+
Coord C1 exon
chr19:10682537-10682704
Coord A exon
chr19:10683140-10683262
Coord C2 exon
chr19:10683366-10683542
Length
123 bp
Sequences
Splice sites
3' ss Seq
CTGAGAACGTAAAACAGCAGGGG
3' ss Score
-4.14
5' ss Seq
GAGGTGCGC
5' ss Score
7.52
Exon sequences
Seq C1 exon
GTGTTACAGGACATGGGCTTGCCGACGGGTGCTGAAGGCAGGGACTCGAGCAAGGGGGAGGACTCGGCTGAGGAGACCGAGGCGAAGCCAGCAGTGGTGGCCCCTGCCCCAGTGGTAGAAGCTGTCTCCACCCCTAGTGCGGCCTTTCCCTCAGATGCCACTGCCGAG
Seq A exon
GGGCCGATCCTGACAAAGCACGGCAAGAACCCAGTCATGGAGCTGAACGAGAAGAGGCGTGGGCTCAAGTACGAGCTCATCTCCGAGACCGGGGGCAGCCACGACAAGCGCTTCGTCATGGAG
Seq C2 exon
GTCGAAGTGGATGGACAGAAGTTCCAAGGTGCTGGTTCCAACAAAAAGGTGGCGAAGGCCTACGCTGCTCTTGCTGCCCTAGAAAAGCTTTTCCCTGACACCCCTCTCGCCCTTGATGCCAACAAAAAGAAGAGAGCCCCAGTACCCGTCAGAGGGGGACCGAAATTTGCTGCTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000129351-'42-47,'42-46,43-47
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.911 A=0.857 C2=0.617
Domain overlap (PFAM):
C1:
PF0003520=dsrm=PD(6.2=7.1)
A:
PF0003520=dsrm=PU(50.8=76.2)
C2:
PF0003520=dsrm=PD(46.0=49.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTTACAGGACATGGGCTTGC
R:
TTTCTAGGGCAGCAAGAGCAG
Band lengths:
252-375
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains