BtaEX6038057 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000013362 | DNM2
Description
Bos taurus dynamin 2 (DNM2), mRNA. [Source:RefSeq mRNA;Acc:NM_001099369]
Coordinates
chr7:16520197-16523297:+
Coord C1 exon
chr7:16520197-16520429
Coord A exon
chr7:16521475-16521726
Coord C2 exon
chr7:16522400-16523297
Length
252 bp
Sequences
Splice sites
3' ss Seq
CCCCCCTTCTCTCTCCACAGCCC
3' ss Score
13.65
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
Exon sequences
Seq C1 exon
ACGAAGGCCTTCATCCACCATGAGCTGCTGGCCTACCTGTACTCGTCGGCGGACCAGAGCAGCCTCATGGAAGAGTCGGCTGACCAGGCCCAGCGGCGGGATGACATGCTTCGCATGTACCACGCGCTCAAGGAGGCACTCAACATCATTGGGGACATCAGCACCAGCACTGTGTCCACTCCCGTGCCCCCACCCGTTGACGACACCTGGATCCAGAACACCAGCAGCCACAG
Seq A exon
CCCCACTCCGCAGCGCCGGCCCGTATCCAGCGTGCACCCCCCAGGCCGGCCCCCAGCAGTGAGGGGTCCCACCCCAGGGCCACCCCTGATTCCTGTGCCGGTGGGGCCAGCTTCCTTCTCAGCGCCCCCGATCCCATCCCGGCCCGGCCCCCACCCCGGCGTGTTTGCCAACAACGACCCCTTCTCGGCCCCACCTCAGATCCCATCTCGGCCGGCTCGGATTCCACCCGGCATTCCCCCTGGAGTGCCCAG
Seq C2 exon
CAGAAGACCCCCTGCTGCGCCCAGCCGGCCCACCATTATCCGCCCAGCCGAGCCATCTCTGCTCGACTAGGCTGCAGGGGTTGGGGGTCATGTTCTTGGGAGTCCTCGAGCAGGACCCTCGGTGCAGGAGCTTCGGTGGTCTAAGCCCACCTGCCGCCCCTGGCCCTCCCGTCCCCAGGCGGGACCAGGCTCCCTGCGGGCAGCCCCTGGCTCTTCCCTAACCCTGGCCCCCATCCCCGGCTGGACACAGCACTGAAAGGAGGGCCCCTGGAGCCCCAGAATGAGGGGTGCTGGGGTGTTGCACTTTGGGAGATGGGGTCTCAGGTACCAGAGGAGAGAGCTGCATCTTGAGTGCCATCTTGAAGGAGGGAGCCAGGCTGGTGTGGGGGGTGGGGTTCACCCGGGGGGTCTCTGGCCAGGAAAGCCTGAGTGGACCAGGCCTAAGAAACGGCACCGCAGTGTCCATACCCCATAGGCCTTGCTCTGCTTCTCAGCAGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013362-'32-30,'32-29,33-30=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.551 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0221213=GED=PD(56.5=66.7)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACACCTGGATCCAGAACACCA
R:
CCTCCTTTCAGTGCTGTGTCC
Band lengths:
294-546
Functional annotations
There are 1 annotated functions for this event
PMID: 15483625
Encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: competition binding, glutathione s tranferase tag, nuclear magnetic resonance, pull down, surface plasmon resonance. ELM ID: ELMI002131; ELM sequence: PQIPSR; Overlap: FULL
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]