BtaEX6038494 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000000595 | FBN3
Description
fibrillin 3 [Source:HGNC Symbol;Acc:HGNC:18794]
Coordinates
chr7:18027382-18028476:-
Coord C1 exon
chr7:18028351-18028476
Coord A exon
chr7:18027951-18028076
Coord C2 exon
chr7:18027382-18027507
Length
126 bp
Sequences
Splice sites
3' ss Seq
TGGCTGGCTGTACTCCCCAGACG
3' ss Score
5.64
5' ss Seq
TGGGTAAGT
5' ss Score
10.24
Exon sequences
Seq C1 exon
ACATTGACGAGTGCGGGGAGATCCCCGCCATCTGTGCCAGCGGCGTCTGCATCAACCAGATCGGGAGCTTCCGCTGCGAGTGCCCTGCGGGCTTCAGCTACAACAGTCTGCTGCTGGTCTGCGAAG
Seq A exon
ACGTGGATGAGTGCACCAGCGGGGAGAACCCCTGCCAGCAGAACGCCGACTGCGTCAACATCGCTGGCAGCTACCGCTGCAAGTGCGCCCAAGGGTACAAGCTGTCGCCGGGCGGGGCTTGCGTGG
Seq C2 exon
GACGGAACGAGTGTCGAGAGATCCCGAATGCCTGTAGCCATGGCGACTGCATGGACACAGTGGACAGCTACATGTGTCTGTGTCACCGTGGCTTCCGGGCCTCAGCGGACCAGACCCTGTGCATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000595-'44-49,'44-48,45-49=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=WD(100=95.3),PF062476=Plasmod_Pvs28=PU(28.7=81.4),PF0764510=EGF_CA=PU(0.1=0.0)
A:
PF062476=Plasmod_Pvs28=FE(34.4=100),PF0764510=EGF_CA=WD(100=95.3)
C2:
PF062476=Plasmod_Pvs28=FE(34.4=100),PF0764510=EGF_CA=WD(100=93.0),PF0764510=EGF_CA=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTGACGAGTGCGGGGAGATC
R:
CATGCACAGGGTCTGGTCC
Band lengths:
249-375
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]