Special

GgaEX1024604 @ galGal4

Exon Skipping

Gene
Description
fibrillin 3 [Source:HGNC Symbol;Acc:HGNC:18794]
Coordinates
chr28:379815-390813:+
Coord C1 exon
chr28:379815-379940
Coord A exon
chr28:380370-380495
Coord C2 exon
chr28:390694-390813
Length
126 bp
Sequences
Splice sites
3' ss Seq
CGTATGTGCTTCTCCCGCAGACA
3' ss Score
10.45
5' ss Seq
TGGGTAAGA
5' ss Score
8.91
Exon sequences
Seq C1 exon
ATATCGATGAGTGCAGCGAGATCCCTGCTATCTGTACCAATGGTGTCTGCATCAACCAGATTGGCAGCTTCCGCTGTGAGTGCCCCATTGGATTCAGCTACAACAACATACTGCTCATCTGTGAAG
Seq A exon
ACATTGATGAATGCAGCAGTGGAGAGAACCTCTGCCAGCGCAATGCTGACTGCATCAACATCCCAGGCAGCTACAGGTGCGAATGCTCGACTGGATACAAGCTGTCACCTAGCGGAGCCTGCGTGG
Seq C2 exon
ATGTGGATGAGTGTGACGGAAACCACCGGTGCCAGCATGGCTGCCAGAACGTGCTTGGAGGCTACAGATGTGGCTGTCCACAGGGCTATGTGCAGCACTACCAGTGGAATCAGTGTGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000327_MULTIEX2-37/54=36-C2
Average complexity
C2*
Mappability confidence:
100%=100=100%
Protein Impact

Alternative protein isoforms (Ref)

No structure available
Features
Disorder rate (Iupred):
  C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):

C1:
PF0764510=EGF_CA=WD(100=95.3),PF0764510=EGF_CA=PU(0.1=0.0)
A:
PF0764510=EGF_CA=WD(100=95.3)
C2:
PF0764510=EGF_CA=WD(100=95.1),PF0764510=EGF_CA=PU(0.1=0.0)


Main Inclusion Isoform:


Main Skipping Isoform:
NA


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
HIGH PSI
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGCGAGATCCCTGCTATCT
R:
CCACACACTGATTCCACTGGT
Band lengths:
234-360
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]