GgaEX1024604 @ galGal3
Exon Skipping
Gene
ENSGALG00000000327 | Q804J3_CHICK
Description
NA
Coordinates
chr28:353431-354824:+
Coord C1 exon
chr28:353431-353556
Coord A exon
chr28:353986-354111
Coord C2 exon
chr28:354699-354824
Length
126 bp
Sequences
Splice sites
3' ss Seq
CGTATGTGCTTCTCCCGCAGACA
3' ss Score
10.45
5' ss Seq
TGGGTAAGA
5' ss Score
8.91
Exon sequences
Seq C1 exon
ATATCGATGAGTGCAGCGAGATCCCTGCTATCTGTACCAATGGTGTCTGCATCAACCAGATTGGCAGCTTCCGCTGTGAGTGCCCCATTGGATTCAGCTACAACAACATACTGCTCATCTGTGAAG
Seq A exon
ACATTGATGAATGCAGCAGTGGAGAGAACCTCTGCCAGCGCAATGCTGACTGCATCAACATCCCAGGCAGCTACAGGTGCGAATGCTCGACTGGATACAAGCTGTCACCTAGCGGAGCCTGCGTGG
Seq C2 exon
GTCGCAACGAGTGCCAGGAAATCCCCAACGTCTGCAGCCACGGGGACTGCGTTGACACTGAGGGCAGCTACATCTGCATCTGTCACAACGGCTTCAAGGCCACTGGGGAGCAGACCATGTGCATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000327-'44-51,'44-50,45-51=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=WD(100=95.3),PF0764510=EGF_CA=PU(0.1=0.0)
A:
PF0764510=EGF_CA=WD(100=95.3)
C2:
PF0764510=EGF_CA=WD(100=93.0),PF0764510=EGF_CA=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGAGTGCAGCGAGATCCCT
R:
CATGCACATGGTCTGCTCCC
Band lengths:
246-372
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]