BtaEX6038649 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000017291 | GPR108
Description
Bos taurus G protein-coupled receptor 108 (GPR108), mRNA. [Source:RefSeq mRNA;Acc:NM_001075333]
Coordinates
chr7:18973143-18974581:-
Coord C1 exon
chr7:18974531-18974581
Coord A exon
chr7:18974221-18974303
Coord C2 exon
chr7:18973143-18973267
Length
83 bp
Sequences
Splice sites
3' ss Seq
CCCTACTGCCCACCCTCCAGAAT
3' ss Score
6
5' ss Seq
GGAGTGAGT
5' ss Score
6.05
Exon sequences
Seq C1 exon
GTGGGGTTCAGTCTGACCCGGGTGAGATCTGGCAGCATTCGCTCCTACTCA
Seq A exon
AATCGGGACTCCCATGAGTGTCCTCTCCGGAAAAACAGTAGCAGCCTCCTGGTTCTCTTCCTCATCAACACCAAGGATCTGGA
Seq C2 exon
GGTCCAGGTACGAAAGTATGGGGAGCAGAAAAAGCTATTCATCTCTGCTGGGCTCCTCCCGGAATCACCCTCCAAACCAGGGCTCCCGAAGTCAGAGCACATGGTCACCCCCAAGGTGGACCACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000017291-'8-7,'8-5,10-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.143 C2=0.465
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGTCTGACCCGGGTGAGATC
R:
CGTGGTCCACCTTGGGGG
Band lengths:
168-251
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]