GgaEX0005412 @ galGal4
Exon Skipping
Gene
ENSGALG00000004052 | GPR107
Description
protein GPR107 precursor [Source:RefSeq peptide;Acc:NP_001025857]
Coordinates
chr17:5829282-5829960:+
Coord C1 exon
chr17:5829282-5829332
Coord A exon
chr17:5829556-5829644
Coord C2 exon
chr17:5829794-5829960
Length
89 bp
Sequences
Splice sites
3' ss Seq
ATGTTTTGCTTCATTGGCAGGAT
3' ss Score
7.33
5' ss Seq
TGTGTGAGT
5' ss Score
5.84
Exon sequences
Seq C1 exon
GTGGGGTTCAGTCTGGATCGAACAAGGAATGATGGGTTCTCCACTTATCTG
Seq A exon
GATGAAGAAGTGGATTACTGTATTTTGAATAAGAAACCTGAGCAAGGTGTTTCTGTTGTAATCTTACTTCTGGACTTCAAAAATGATGT
Seq C2 exon
TGTGAAGGTACAGTTCTCTGCAGAAGCTTCTCACCTGCTGCCTAAAATTTCATTTGTGTCTGACGAAAATGCCACTGCCTTGATTACCAAGCCACCAAAATCTTCTGAAGATAAAAGTGATTCTGTTAAAAGTCCAACGGAGACTAACAAAAATACAGCTGGCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004052_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.059 A=0.000 C2=0.526
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGATCGAACAAGGAATGATGGGT
R:
AGTCTCCGTTGGACTTTTAACAGA
Band lengths:
182-271
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]