HsaEX0028225 @ hg38
Exon Skipping
Gene
ENSG00000148358 | GPR107
Description
G protein-coupled receptor 107 [Source:HGNC Symbol;Acc:HGNC:17830]
Coordinates
chr9:130076412-130079769:+
Coord C1 exon
chr9:130076412-130076462
Coord A exon
chr9:130077299-130077378
Coord C2 exon
chr9:130079630-130079769
Length
80 bp
Sequences
Splice sites
3' ss Seq
ATTGGCTCTTCCTTTCTCAGGAT
3' ss Score
10.76
5' ss Seq
TGAGTAAGT
5' ss Score
8.82
Exon sequences
Seq C1 exon
ATTGGATTTAGCCTAGACCGTACAAAGAATGATGGCTTTTCTTCTTACCTG
Seq A exon
GATGAAGATGTGAATTACTGTATTTTAAAGAAACAGTCTGTCTCTGTCACCCTTTTAATCCTAGACATCTCCAGAAGTGA
Seq C2 exon
GGTAAGAGTAAAGTCTCCACCAGAAGCTGGTACCCAGTTACCAAAGATCATCTTCAGCAGGGATGAGAAAGTCCTTGGTCAGAGCCAGGAGCCTAATGTTAACCCTGCTTCAGCAGGCAACCAGACCCAGAAGACACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000148358_MULTIEX1-1/2=C1-C2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.108 A=0.000 C2=0.498
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGACCGTACAAAGAATGATGGCT
R:
GTGTCTTCTGGGTCTGGTTGC
Band lengths:
174-254
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development