BtaEX6046688 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000004204 | GPR107
Description
Bos taurus G protein-coupled receptor 107 (GPR107), mRNA. [Source:RefSeq mRNA;Acc:NM_001099164]
Coordinates
chr11:100444053-100445742:+
Coord C1 exon
chr11:100444053-100444103
Coord A exon
chr11:100444346-100444425
Coord C2 exon
chr11:100445603-100445742
Length
80 bp
Sequences
Splice sites
3' ss Seq
AACTGGGTCTTCTTTCTCAGGAT
3' ss Score
8.43
5' ss Seq
TGAGTAAGT
5' ss Score
8.82
Exon sequences
Seq C1 exon
ATTGGATTCAGCCTAGACCGAACAAAGAACGATGGCTTTTCTTCGTATCTG
Seq A exon
GATGAAGATGTGAATTACTGTATTTTAAAGAAGCAGTCTGCCTCTGTCACGCTTTTAATCCTAGACATCTCCAGAAGTGA
Seq C2 exon
AGTGAAAATAAGATCTCCACCAGAAGCTGGTGCCCAGTTACCAAAGATCATCTTTACCAAGGATGAGAAGGTTGTTGGTCAGAGCCAGGAGCCTGGTGTTAACCCTGTCTCATCAGGCAGCCAGGCTCCGAAAGAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004204-'4-7,'4-6,6-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.438
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCGAACAAAGAACGATGGCT
R:
CTTGTTCTTTCGGAGCCTGGC
Band lengths:
175-255
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]